View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_82 (Length: 226)
Name: NF18704_low_82
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_82 |
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| [»] scaffold0651 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8102 - 8329
Alignment:
| Q |
1 |
aaacacagaaagacaaaagtaaatacac--acacatatataaacatatatatacctcgtcagggattggatacatagaagcagagatgttgaagaaagac |
98 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8102 |
aaacacagaaagacaaaagtaaatacacacacacatatataaacatatatatacctcgtcagggattggatacatagaagcagagatgttgaagaaagac |
8201 |
T |
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| Q |
99 |
tgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactccatctcag |
198 |
Q |
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| T |
8202 |
tgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactccatctcag |
8301 |
T |
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| Q |
199 |
ctacagaaaatccatgtttgtatttgct |
226 |
Q |
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| T |
8302 |
ctacagaaaatccatgtttgtatttgct |
8329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 592 - 410
Alignment:
| Q |
43 |
atatatatacctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatc |
142 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
592 |
atatatatacctcgtcagggattggatatttagaagcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatc |
493 |
T |
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| Q |
143 |
cattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgc |
225 |
Q |
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| T |
492 |
cattggcagtgaagggaacattacttcacatatgcttgtgagtgactccatctcagccacagaaaacccatgtttgtatttgc |
410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31315595 - 31315368
Alignment:
| Q |
1 |
aaacacagaaagacaaaagtaaatacacacaca--tatataaacatatatatacctcgtcagggattggatacatagaagcagagatgttgaagaaagac |
98 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31315595 |
aaacacagaaagacaaaagtaaatacacacacacatatataaacatatatatacctcgtcagggattggatacatagaagcagagatgttgaagaaagac |
31315496 |
T |
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| Q |
99 |
tgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactccatctcag |
198 |
Q |
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| T |
31315495 |
tgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactccatctcag |
31315396 |
T |
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| Q |
199 |
ctacagaaaatccatgtttgtatttgct |
226 |
Q |
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| T |
31315395 |
ctacagaaaatccatgtttgtatttgct |
31315368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 31330680 - 31330498
Alignment:
| Q |
43 |
atatatatacctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatc |
142 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
31330680 |
atatatatacctcgtcagggattggatatttagaagcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatc |
31330581 |
T |
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| Q |
143 |
cattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgc |
225 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
31330580 |
cattggcagtgaagggaacattacttcacatatgcttgtgagtgactccatctcagccacagaaaacccatgtttgtatttgc |
31330498 |
T |
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