View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_low_84 (Length: 223)

Name: NF18704_low_84
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_low_84
NF18704_low_84
[»] chr3 (19 HSPs)
chr3 (1-191)||(44433329-44433519)
chr3 (138-198)||(51315740-51315800)
chr3 (143-198)||(44586042-44586097)
chr3 (131-170)||(25154465-25154504)
chr3 (136-193)||(578672-578729)
chr3 (141-198)||(1814809-1814866)
chr3 (136-171)||(14349391-14349426)
chr3 (139-198)||(25902609-25902668)
chr3 (143-198)||(33329878-33329933)
chr3 (140-198)||(38177178-38177236)
chr3 (129-167)||(51315514-51315552)
chr3 (141-198)||(50802660-50802717)
chr3 (141-198)||(50873160-50873217)
chr3 (139-171)||(20432189-20432221)
chr3 (139-171)||(28712744-28712776)
chr3 (138-166)||(28944057-28944085)
chr3 (138-170)||(38958127-38958159)
chr3 (138-166)||(44436417-44436445)
chr3 (138-174)||(49787248-49787284)
[»] scaffold0515 (1 HSPs)
scaffold0515 (135-198)||(3634-3697)
[»] scaffold0306 (1 HSPs)
scaffold0306 (135-198)||(3634-3697)
[»] chr1 (13 HSPs)
chr1 (139-198)||(3377500-3377559)
chr1 (140-186)||(14978797-14978843)
chr1 (140-196)||(3377769-3377825)
chr1 (138-198)||(27864413-27864473)
chr1 (139-198)||(50226391-50226450)
chr1 (139-194)||(51250484-51250539)
chr1 (142-197)||(1096469-1096524)
chr1 (139-198)||(17760681-17760740)
chr1 (137-191)||(12960843-12960897)
chr1 (137-198)||(15659250-15659311)
chr1 (141-197)||(5287831-5287887)
chr1 (138-170)||(25085397-25085429)
chr1 (138-170)||(25486496-25486528)
[»] chr2 (20 HSPs)
chr2 (137-198)||(6592721-6592782)
chr2 (139-198)||(34679096-34679155)
chr2 (139-198)||(43028793-43028852)
chr2 (138-198)||(25375129-25375189)
chr2 (137-197)||(5470592-5470652)
chr2 (140-198)||(39918434-39918492)
chr2 (140-172)||(15022838-15022870)
chr2 (139-171)||(19399458-19399490)
chr2 (138-198)||(31827523-31827583)
chr2 (139-198)||(25379-25438)
chr2 (139-174)||(14943823-14943858)
chr2 (139-198)||(21358361-21358420)
chr2 (135-166)||(25411568-25411599)
chr2 (135-166)||(34100766-34100797)
chr2 (138-197)||(44297561-44297620)
chr2 (135-197)||(19206137-19206199)
chr2 (140-193)||(4576802-4576854)
chr2 (137-170)||(32969811-32969844)
chr2 (138-170)||(14489494-14489526)
chr2 (139-171)||(36715577-36715609)
[»] chr5 (18 HSPs)
chr5 (138-198)||(12406039-12406099)
chr5 (140-198)||(3333957-3334015)
chr5 (142-198)||(37897973-37898029)
chr5 (138-198)||(27904739-27904799)
chr5 (139-198)||(36798169-36798228)
chr5 (139-198)||(36798432-36798491)
chr5 (143-197)||(19340767-19340821)
chr5 (135-166)||(2974659-2974690)
chr5 (140-195)||(21066375-21066430)
chr5 (139-193)||(12406301-12406355)
chr5 (139-197)||(22300600-22300658)
chr5 (136-186)||(24405486-24405536)
chr5 (143-193)||(40133140-40133190)
chr5 (139-198)||(18403246-18403304)
chr5 (142-198)||(20630000-20630057)
chr5 (138-170)||(2974918-2974950)
chr5 (138-174)||(26562988-26563024)
chr5 (141-197)||(43098281-43098337)
[»] chr7 (19 HSPs)
chr7 (135-198)||(41243639-41243702)
chr7 (138-198)||(6792052-6792112)
chr7 (135-197)||(17931983-17932045)
chr7 (138-198)||(20184914-20184974)
chr7 (142-198)||(47909696-47909752)
chr7 (138-197)||(3318316-3318375)
chr7 (138-197)||(15107246-15107305)
chr7 (143-198)||(18186708-18186763)
chr7 (144-198)||(21505873-21505927)
chr7 (141-198)||(28472391-28472447)
chr7 (135-192)||(36903529-36903586)
chr7 (138-198)||(20505096-20505156)
chr7 (138-186)||(35250117-35250165)
chr7 (138-193)||(14247562-14247616)
chr7 (139-170)||(28350115-28350146)
chr7 (138-192)||(28786019-28786073)
chr7 (138-198)||(42256580-42256641)
chr7 (138-198)||(4049704-4049764)
chr7 (139-171)||(11373846-11373878)
[»] chr8 (12 HSPs)
chr8 (137-198)||(28349563-28349624)
chr8 (138-197)||(27545342-27545401)
chr8 (143-197)||(25896993-25897047)
chr8 (139-198)||(23702390-23702449)
chr8 (138-170)||(20853376-20853408)
chr8 (138-186)||(41487477-41487525)
chr8 (139-169)||(29044830-29044860)
chr8 (140-198)||(36688253-36688311)
chr8 (138-198)||(30539247-30539306)
chr8 (137-197)||(31947851-31947911)
chr8 (138-186)||(32071280-32071327)
chr8 (138-166)||(41602899-41602927)
[»] chr6 (7 HSPs)
chr6 (138-198)||(10727450-10727510)
chr6 (135-198)||(30349612-30349675)
chr6 (136-198)||(33399782-33399843)
chr6 (138-197)||(2203185-2203244)
chr6 (139-186)||(30349348-30349395)
chr6 (141-198)||(6036915-6036971)
chr6 (139-171)||(2841095-2841127)
[»] chr4 (29 HSPs)
chr4 (141-197)||(35615315-35615371)
chr4 (138-198)||(53312284-53312344)
chr4 (142-197)||(1420537-1420592)
chr4 (139-198)||(25909486-25909545)
chr4 (141-191)||(21957730-21957780)
chr4 (139-192)||(2016790-2016843)
chr4 (140-191)||(14449548-14449599)
chr4 (143-198)||(51362539-51362594)
chr4 (140-198)||(49185571-49185628)
chr4 (129-198)||(12719702-12719771)
chr4 (138-198)||(1420800-1420860)
chr4 (138-194)||(2836897-2836953)
chr4 (138-174)||(4796318-4796354)
chr4 (142-198)||(14016722-14016778)
chr4 (135-166)||(6207464-6207495)
chr4 (142-197)||(21871641-21871696)
chr4 (142-197)||(21927502-21927557)
chr4 (143-198)||(50769366-50769421)
chr4 (144-198)||(14060760-14060814)
chr4 (139-193)||(19909172-19909226)
chr4 (140-194)||(20112409-20112463)
chr4 (140-186)||(43074834-43074880)
chr4 (138-191)||(2017051-2017104)
chr4 (137-170)||(11824185-11824218)
chr4 (137-198)||(44356653-44356713)
chr4 (140-197)||(50769618-50769675)
chr4 (135-195)||(2653948-2654008)
chr4 (138-198)||(4796034-4796094)
chr4 (142-174)||(8070630-8070662)
[»] scaffold1458 (1 HSPs)
scaffold1458 (135-198)||(1466-1529)
[»] scaffold0025 (1 HSPs)
scaffold0025 (143-195)||(19600-19652)
[»] scaffold0150 (1 HSPs)
scaffold0150 (143-197)||(9558-9612)
[»] scaffold0725 (1 HSPs)
scaffold0725 (138-166)||(6719-6747)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44433519 - 44433329
Alignment:
Q  1 atgcacacacgtcatttaacagcacatatattactagtccatatccgaaggtctgtatagagttaaatattctgccatagcagaaatattatcgaaataa 100  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44433519 atgcaaacaagtcatttaacagcacatatattactagtccatatccgaaggtatgtatagagttaaatattctgccatagcagaaatattatcgaaataa 44433420  T
Q  101 atgttgaaaactgcatataatatgattgattaagaaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  44433419 atgttgaaaactgcatataatatgattgattaagaaataggcttaatagcagttttagccccctaacttttccacagttgcgatttcggcc 44433329  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 51315800 - 51315740
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||| |||||||||||    
T  51315800 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 51315740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 44586097 - 44586042
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||||||||| |||  |||||||||| |||||||||||    
T  44586097 ttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 44586042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 25154504 - 25154465
Alignment:
Q  131 taagaaataggcttaatagcagttttagccccctaacttt 170  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  25154504 taagaaataggcttaatagcagttttaaccccctaacttt 25154465  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 578729 - 578672
Alignment:
Q  136 aataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcccc 193  Q
    |||||| |||||| ||||||||||| |||||||||||||  |||||||||| ||||||    
T  578729 aataggtttaatatcagttttagcctcctaacttttccaaagttgcgattttggcccc 578672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 1814866 - 1814809
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||| |||||||||||||  ||| |||||| || ||||||||    
T  1814866 gcttaatagcagttttagcctcctaacttttccaaagtttcgattttggacccctaag 1814809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 14349426 - 14349391
Alignment:
Q  136 aataggcttaatagcagttttagccccctaactttt 171  Q
    ||||||||||||||||||||| ||||||||||||||    
T  14349426 aataggcttaatagcagttttcgccccctaactttt 14349391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 25902668 - 25902609
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||| |||||||||||||||||||||  ||  |||||||||| ||| |||||||    
T  25902668 aggcttaatatcagttttagccccctaactttctcaaagttgcgattttggctccctaag 25902609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 33329933 - 33329878
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||| ||||| |||||| |||  |||||||||| |||||||||||    
T  33329933 ttaatagcagttttaaccccccaactttcccaacgttgcgattttggccccctaag 33329878  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 38177178 - 38177236
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||| ||| |||||||||| ||||||| |||  |||||||||| |||||||||||    
T  38177178 ggcttaatggcaattttagccccttaactttcccaaagttgcgattttggccccctaag 38177236  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 51315514 - 51315552
Alignment:
Q  129 attaagaaataggcttaatagcagttttagccccctaac 167  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  51315514 attaaaaaataggcttaatagcagttttggccccctaac 51315552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 50802660 - 50802717
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||| || | |||||||||||  |||| ||||| |||||||||||    
T  50802660 gcttaatagcagttttaacctcttaacttttccaaagttgtgattttggccccctaag 50802717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 50873217 - 50873160
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||| || | |||||||||||  |||| ||||| |||||||||||    
T  50873217 gcttaatagcagttttaacctcttaacttttccaaagttgtgattttggccccctaag 50873160  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 20432189 - 20432221
Alignment:
Q  139 aggcttaatagcagttttagccccctaactttt 171  Q
    |||||||||||||||||| ||||||||||||||    
T  20432189 aggcttaatagcagtttttgccccctaactttt 20432221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 28712776 - 28712744
Alignment:
Q  139 aggcttaatagcagttttagccccctaactttt 171  Q
    |||||||||||||||||| ||||||||||||||    
T  28712776 aggcttaatagcagttttcgccccctaactttt 28712744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 28944057 - 28944085
Alignment:
Q  138 taggcttaatagcagttttagccccctaa 166  Q
    |||||||||||||||||||||||||||||    
T  28944057 taggcttaatagcagttttagccccctaa 28944085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 38958159 - 38958127
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttt 170  Q
    ||||||||||||||||||| |||||||||||||    
T  38958159 taggcttaatagcagttttcgccccctaacttt 38958127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 44436417 - 44436445
Alignment:
Q  138 taggcttaatagcagttttagccccctaa 166  Q
    |||||||||||||||||||||||||||||    
T  44436417 taggcttaatagcagttttagccccctaa 44436445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 49787248 - 49787284
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttcca 174  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  49787248 taggcttaatagcaattttagccctctaacttttcca 49787284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 3634 - 3697
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||||||| |||||||||||    
T  3634 aaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 3697  T

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Target: scaffold0306 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 3634 - 3697
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||||||| |||||||||||    
T  3634 aaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 3697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 3377500 - 3377559
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  3377500 aggcttaatagcagttttagccccctaacttttccaaagttgcgattttggccccctaag 3377559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 14978797 - 14978843
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgattt 186  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||    
T  14978797 ggcttaatagcagttttagccccctaacttttccaaagttgcgattt 14978843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 3377825 - 3377769
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcccccta 196  Q
    ||||||||||||||||||||||||||||||| |||  |||| ||||| |||||||||    
T  3377825 ggcttaatagcagttttagccccctaactttcccaaagttgtgattttggcccccta 3377769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 27864473 - 27864413
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||| |||||||||||| ||||||||||||||  ||||| |||| |||||||||||    
T  27864473 taggcttaacagcagttttagctccctaacttttccaaagttgcaattttggccccctaag 27864413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 50226391 - 50226450
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||  |||||||||||||||||||||| ||  |||||||||| |||||||||||    
T  50226391 aggcttaattacagttttagccccctaactttttcaaagttgcgattttggccccctaag 50226450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 51250484 - 51250539
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccc 194  Q
    |||||||||| |||||||||||||||||||||| ||  |||||||||| |||||||    
T  51250484 aggcttaataacagttttagccccctaactttttcaaagttgcgattttggccccc 51250539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 1096469 - 1096524
Alignment:
Q  142 cttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||| ||||||||||||| |||||||||||  |||||||||| || |||||||    
T  1096469 cttaataacagttttagccccttaacttttccaaagttgcgattttggtcccctaa 1096524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 17760681 - 17760740
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||| ||||||||||||||||   ||  |||||||||| |||||||||||    
T  17760681 aggcttaatagcagctttagccccctaacttcctcaaagttgcgattttggccccctaag 17760740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 12960843 - 12960897
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcc 191  Q
    |||||||||||| |||||||||||| ||||||||| ||  |||||||||| ||||    
T  12960843 ataggcttaataacagttttagcccgctaactttttcaaagttgcgattttggcc 12960897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 15659311 - 15659250
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||| |||||||||||||||  |||||||||||||||  |||| ||||| || ||||||||    
T  15659311 ataggtttaatagcagttttaagcccctaacttttccaaagttgtgattttggtcccctaag 15659250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 5287887 - 5287831
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||||||||||||| |||| |||||||  ||  |||||||||| ||||||||||    
T  5287887 gcttaatagcagttttaaccccttaactttctcaaagttgcgattttggccccctaa 5287831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 25085397 - 25085429
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttt 170  Q
    ||||||||||||||||||| |||||||||||||    
T  25085397 taggcttaatagcagttttcgccccctaacttt 25085429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 25486528 - 25486496
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttt 170  Q
    ||||||||||||||||||| |||||||||||||    
T  25486528 taggcttaatagcagtttttgccccctaacttt 25486496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 6592721 - 6592782
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| | |||||||||    
T  6592721 ataggcttaatagcagttttagccccctaacttttccaaagttgcgattttgaccccctaag 6592782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 34679096 - 34679155
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||    
T  34679096 aggcttaatagcagttttagccccctaacttttccaaagttgcgattttggccacctaag 34679155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 43028793 - 43028852
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||    
T  43028793 aggcttaatagcagttttagccccctaacttctccaaagttgcgattttggccccctaag 43028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 25375189 - 25375129
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||| |||| ||  |||||||||| |||||||||||    
T  25375189 taggcttaatagcagttttagccccctaattttttcaatgttgcgattttggccccctaag 25375129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 5470652 - 5470592
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||| ||||||||||||||||||||||||| | |  |||||||||| ||||||||||    
T  5470652 ataggctttatagcagttttagccccctaactttcctaaagttgcgattttggccccctaa 5470592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 39918434 - 39918492
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||| ||||||||||||||||||||  ||  |||||||||| |||||||||||    
T  39918434 ggcttaatagtagttttagccccctaactttctcaaagttgcgattttggccccctaag 39918492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 15022838 - 15022870
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttc 172  Q
    |||||||||||||||||||||||||||||||||    
T  15022838 ggcttaatagcagttttagccccctaacttttc 15022870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 19399490 - 19399458
Alignment:
Q  139 aggcttaatagcagttttagccccctaactttt 171  Q
    |||||||||||||||||||||||||||||||||    
T  19399490 aggcttaatagcagttttagccccctaactttt 19399458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 31827523 - 31827583
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||| | ||||||||||||||  |||| ||||| | |||||||||    
T  31827523 taggcttaatagcagttttaactccctaacttttccaaagttgtgattttgcccccctaag 31827583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 25379 - 25438
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||| ||||||| ||||||||||||| |||  ||| |||||| |||||||||||    
T  25379 aggcttaataacagtttttgccccctaactttcccaaagttacgattttggccccctaag 25438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 14943858 - 14943823
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttcca 174  Q
    |||||||||||||||||||||||| |||||||||||    
T  14943858 aggcttaatagcagttttagccccttaacttttcca 14943823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 21358420 - 21358361
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||| |||||||||||||  ||  |||| ||||| |||||||||||    
T  21358420 aggcttaatagcagtttttgccccctaactttctcaaagttgtgattttggccccctaag 21358361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 166
Target Start/End: Original strand, 25411568 - 25411599
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaa 166  Q
    ||||||||||||||||||||||||||||||||    
T  25411568 aaataggcttaatagcagttttagccccctaa 25411599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 166
Target Start/End: Original strand, 34100766 - 34100797
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaa 166  Q
    ||||||||||||||||||||||||||||||||    
T  34100766 aaataggcttaatagcagttttagccccctaa 34100797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 44297561 - 44297620
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||||| |||||||| ||||| ||||| |  |||||||||| ||||||||||    
T  44297561 taggcttaatagcacttttagcctcctaatttttcaaaagttgcgattttggccccctaa 44297620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 19206137 - 19206199
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||||||||||||| |||| ||||||||| |||  ||  |||||||||| ||||||||||    
T  19206137 aaataggcttaatagcaattttcgccccctaattttcacaaagttgcgattttggccccctaa 19206199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 4576854 - 4576802
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcccc 193  Q
    ||||||||||||||||||| |||||||| ||||||  |||||||||| ||||||    
T  4576854 ggcttaatagcagttttagacccctaac-tttccaaagttgcgattttggcccc 4576802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 32969844 - 32969811
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttt 170  Q
    |||||||||||||||||||| |||||||||||||    
T  32969844 ataggcttaatagcagttttcgccccctaacttt 32969811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 14489526 - 14489494
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttt 170  Q
    ||||||||||||||||||| |||||||||||||    
T  14489526 taggcttaatagcagttttcgccccctaacttt 14489494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 36715609 - 36715577
Alignment:
Q  139 aggcttaatagcagttttagccccctaactttt 171  Q
    ||||||||||||||||||||| |||||||||||    
T  36715609 aggcttaatagcagttttagctccctaactttt 36715577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 12406039 - 12406099
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||| |||||||||||    
T  12406039 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 12406099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 3334015 - 3333957
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||| |||||||||||    
T  3334015 ggcttaatagtagttttagccccctaacttttccaaagttgcgattttggccccctaag 3333957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 37898029 - 37897973
Alignment:
Q  142 cttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||||||||||| ||  |||||||||| |||||||||||    
T  37898029 cttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaag 37897973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 27904799 - 27904739
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||||| ||||||||| ||  |||||||||| |||||| ||||    
T  27904799 taggcttaatagcagttttagccctctaactttttcaaagttgcgattttggccccgtaag 27904739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 36798169 - 36798228
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||| ||| |||||||||||  ||||| |||| |||||||||||    
T  36798169 aggcttaatagcagttttagacccttaacttttccaaagttgcaattttggccccctaag 36798228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 36798491 - 36798432
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||  ||  |||||||||| || ||||||||    
T  36798491 aggcttaatagcagttttagccccctaactttctcaaagttgcgattttggtcccctaag 36798432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 19340767 - 19340821
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||||||||||||||||||||||||||||   ||||||||| | ||||||||    
T  19340767 ttaatagcagttttagccccctaacttttccaaaattgcgattttgaccccctaa 19340821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 166
Target Start/End: Original strand, 2974659 - 2974690
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaa 166  Q
    ||||||||||||||||||||||||||||||||    
T  2974659 aaataggcttaatagcagttttagccccctaa 2974690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 21066375 - 21066430
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccct 195  Q
    ||||||||| || ||||||||||||||||||||||  ||| |||||| ||||||||    
T  21066375 ggcttaataacaattttagccccctaacttttccaaagtttcgattttggccccct 21066430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 12406355 - 12406301
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcccc 193  Q
    ||||||||||||| ||||||||||||||||||| ||  |||| ||||| ||||||    
T  12406355 aggcttaatagcaattttagccccctaactttttcaaagttgagattttggcccc 12406301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 22300600 - 22300658
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||||||| ||||||||||| |||||||||| |  |||||||||| ||| ||||||    
T  22300600 aggcttaatagtagttttagccctctaacttttctaaagttgcgattttggcaccctaa 22300658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 24405486 - 24405536
Alignment:
Q  136 aataggcttaatagcagttttagccccctaacttttccatggttgcgattt 186  Q
    |||||| |||||||||||||||| |||||||||||| ||  ||||||||||    
T  24405486 aataggtttaatagcagttttagtcccctaactttttcaaagttgcgattt 24405536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 40133190 - 40133140
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggcccc 193  Q
    ||||||||| |||||||||||||||||| |||  |||||||||| ||||||    
T  40133190 ttaatagcaattttagccccctaactttcccaaagttgcgattttggcccc 40133140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 18403304 - 18403246
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatg-gttgcgatttcggccccctaag 198  Q
    |||||||||||||||||| ||| |||||||||  |||| |||||||||| |||||||||||    
T  18403304 aggcttaatagcagttttcgccacctaacttt--catgagttgcgattttggccccctaag 18403246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 20630057 - 20630000
Alignment:
Q  142 cttaatagcagttttagcc-ccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||| ||||||||||||||  |||| ||||| |||||| ||||    
T  20630057 cttaatagcagttttagcctccctaacttttccaaagttgtgattttggccccttaag 20630000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 2974950 - 2974918
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttt 170  Q
    ||||||||||||||||||| |||||||||||||    
T  2974950 taggcttaatagcagtttttgccccctaacttt 2974918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 26562988 - 26563024
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttcca 174  Q
    ||||||||||||||||||||| || ||||||||||||    
T  26562988 taggcttaatagcagttttagtccgctaacttttcca 26563024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 43098337 - 43098281
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||||||||| |||||||||||| ||  ||| ||||||  |||||||||    
T  43098337 gcttaatagcagttttagtcccctaactttttcaaagttacgatttttgccccctaa 43098281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 41243639 - 41243702
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| ||||  ||||||||||    
T  41243639 aaataggcttaatagcagttttagccccctaacttttccaaagttgcaattttagccccctaag 41243702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 6792112 - 6792052
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||| || ||||||||    
T  6792112 taggtttaatagcagttttagccccctaacttttccaaagttgcgattttggtcccctaag 6792052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 17932045 - 17931983
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||||||||||||||||| ||| |||||||||  |||||||||| ||||| ||||    
T  17932045 aaataggcttaatagcagttttagcctcctcacttttccaaagttgcgattttggccctctaa 17931983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 20184914 - 20184974
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||| |||||||||| ||||||||||||||  ||||||||||  ||||||||||    
T  20184914 taggcttaataacagttttagctccctaacttttccaaagttgcgattttagccccctaag 20184974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 47909696 - 47909752
Alignment:
Q  142 cttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||  ||||||||||    
T  47909696 cttaatagcagttttagccccctaactttcccaaagttgcgattttagccccctaag 47909752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 3318316 - 3318375
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||| |||||||||||| |||||||||||  |||||||||| || |||||||    
T  3318316 taggcttaataggagttttagccccttaacttttccaaagttgcgattttggtcccctaa 3318375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 15107305 - 15107246
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||||||||||| |||||||| |||||||  ||| |||||| ||||||||||    
T  15107305 taggcttaatagcagttttacccccctaatttttccaaagttacgattttggccccctaa 15107246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 18186763 - 18186708
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||  ||| |||||| | |||||||||    
T  18186763 ttaatagcagttttagccccctaacttttccaaagttacgattttgaccccctaag 18186708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 21505927 - 21505873
Alignment:
Q  144 taatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||| |||||||||||| ||  |||||||||| |||||||||||    
T  21505927 taatagcagttttagtcccctaactttttcaaagttgcgattttggccccctaag 21505873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 28472391 - 28472447
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||| |||||||||||  |||||||||| | |||||||||    
T  28472391 gcttaatagcagttttagcccc-taacttttccaaagttgcgattttgaccccctaag 28472447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 36903586 - 36903529
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccc 192  Q
    |||| |||||||||||||||||| ||||||||||||| ||  |||||||||| |||||    
T  36903586 aaatcggcttaatagcagttttaaccccctaactttttcaatgttgcgattttggccc 36903529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 20505096 - 20505156
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||| ||||||||||||||||||||||||||||  ||  ||||||| || |||||||||||    
T  20505096 taggtttaatagcagttttagccccctaactttctcaaagttgcgactttggccccctaag 20505156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 35250117 - 35250165
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgattt 186  Q
    |||||||||||| ||||||||||| ||||||||||||  ||||||||||    
T  35250117 taggcttaatagtagttttagccctctaacttttccaaagttgcgattt 35250165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 14247616 - 14247562
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcccc 193  Q
    |||||||||||||||||||| |||| |||||||||||  |||||||||||| ||||    
T  14247616 taggcttaatagcagttttatcccc-taacttttccaaagttgcgatttcgacccc 14247562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 170
Target Start/End: Original strand, 28350115 - 28350146
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttt 170  Q
    ||||||||||||||||||||||||||||||||    
T  28350115 aggcttaatagcagttttagccccctaacttt 28350146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 28786073 - 28786019
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccc 192  Q
    |||||||||||||||||||| |||| |||||||||||  |||| ||||| |||||    
T  28786073 taggcttaatagcagttttaaccccataacttttccaaagttgtgattttggccc 28786019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 42256580 - 42256641
Alignment:
Q  138 taggcttaatagcagtttt-agccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||| | ||||||||||||| ||  ||||||||||  ||||||||||    
T  42256580 taggcttaatagcagttttaacccccctaactttttcaaagttgcgattttagccccctaag 42256641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 4049704 - 4049764
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||| |||| |||||||||||||| |||||||||| |  |||||||||| |||||| ||||    
T  4049704 taggtttaacagcagttttagcccactaacttttctaaagttgcgattttggccccttaag 4049764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 11373846 - 11373878
Alignment:
Q  139 aggcttaatagcagttttagccccctaactttt 171  Q
    |||||||||||||||||| ||||||||||||||    
T  11373846 aggcttaatagcagttttcgccccctaactttt 11373878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 28349624 - 28349563
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||| |||||||||||||||||||| |||  |||||||||| |||||||||||    
T  28349624 ataggcttaatagtagttttagccccctaactttcccaaagttgcgattttggccccctaag 28349563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 27545342 - 27545401
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||||||| ||||||||    
T  27545342 taggcttaatagcagttttagccgtctaacttttccaaagttgcgatttcgaccccctaa 27545401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 25896993 - 25897047
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| ||||||||||    
T  25896993 ttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaa 25897047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 23702449 - 23702390
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||||||||||||| | |  ||||||||||  ||||||||||    
T  23702449 aggcttaatagcagttttagccccctaactttccaaaagttgcgattttagccccctaag 23702390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 20853376 - 20853408
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttt 170  Q
    |||||||||||||||||||||||||||||||||    
T  20853376 taggcttaatagcagttttagccccctaacttt 20853408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 41487525 - 41487477
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgattt 186  Q
    |||| ||||||||||||||||||| ||||||||||||  ||||||||||    
T  41487525 taggtttaatagcagttttagccctctaacttttccaaagttgcgattt 41487477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 169
Target Start/End: Complemental strand, 29044860 - 29044830
Alignment:
Q  139 aggcttaatagcagttttagccccctaactt 169  Q
    |||||||||||||||||||||||||||||||    
T  29044860 aggcttaatagcagttttagccccctaactt 29044830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 36688311 - 36688253
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||| ||||||||||||| ||  |||| ||||| | |||||||||    
T  36688311 ggcttaatagcagttttaaccccctaactttttcaaagttgtgattttgaccccctaag 36688253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 30539306 - 30539247
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||| ||| ||||||| |||  |||||||||| || ||||||||    
T  30539306 taggcttaatagcagttttag-cccttaactttcccaaagttgcgattttggtcccctaag 30539247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 31947851 - 31947911
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||||||| ||| |||| |||||||| |||||| |  |||||||||| ||||||||||    
T  31947851 ataggcttaattgcacttttggccccctatcttttcaaaagttgcgattttggccccctaa 31947911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 32071327 - 32071280
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgattt 186  Q
    ||||||||||||||||||||| ||||||||||||| |  ||||||||||    
T  32071327 taggcttaatagcagttttag-cccctaacttttctaaagttgcgattt 32071280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 41602927 - 41602899
Alignment:
Q  138 taggcttaatagcagttttagccccctaa 166  Q
    |||||||||||||||||||||||||||||    
T  41602927 taggcttaatagcagttttagccccctaa 41602899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 10727510 - 10727450
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||| |||||||||||||||||||||||||||||||  |||| ||||| |||||||||||    
T  10727510 taggcataatagcagttttagccccctaacttttccaaagttgtgattttggccccctaag 10727450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 30349675 - 30349612
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||| | |||||||||||| ||  |||||||||| |||||||||||    
T  30349675 aaataggcttaatagcagtttttgtcccctaactttttcaaagttgcgattttggccccctaag 30349612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 33399782 - 33399843
Alignment:
Q  136 aataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||| |||||    
T  33399782 aataggcttaatagcagttttag-cccctaacttttccaaagttgcgattttggccctctaag 33399843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 2203185 - 2203244
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||||| ||||||| |||||||||| |||  |||||||||| |||| |||||    
T  2203185 taggcttaatagcaattttagctccctaactttcccaaagttgcgattttggcctcctaa 2203244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 30349348 - 30349395
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgattt 186  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||    
T  30349348 aggcttaatagcagttttagccctctaactttcccaaagttgcgattt 30349395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 6036971 - 6036915
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||| ||||||||||||| |  |||||||||| |||| ||||||    
T  6036971 gcttaatagcagttttag-cccctaacttttctaaagttgcgattttggcctcctaag 6036915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 2841127 - 2841095
Alignment:
Q  139 aggcttaatagcagttttagccccctaactttt 171  Q
    |||||||||||||||||||| ||||||||||||    
T  2841127 aggcttaatagcagttttagacccctaactttt 2841095  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 35615315 - 35615371
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||    
T  35615315 gcttaatagcagttttagccccctaacttttctaaagttgcgattttggccccctaa 35615371  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 53312284 - 53312344
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||| ||||||||||||||||||| ||  |||||||||| |||||||||||    
T  53312284 taggcttaatagcatttttagccccctaactttttcaaagttgcgattttggccccctaag 53312344  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 1420537 - 1420592
Alignment:
Q  142 cttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||||||||||||||||||||||||||  |||||||||| |||| |||||    
T  1420537 cttaatagcagttttagccccctaacttttccaaagttgcgattttggcctcctaa 1420592  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 25909486 - 25909545
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||| ||||||||||||||||  |||| ||||| |||||||||||    
T  25909486 aggcttaatagcagttttaaccccctaacttttccaaagttgtgattttggccccctaag 25909545  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 21957780 - 21957730
Alignment:
Q  141 gcttaatagcagttttagccccctaacttttccatggttgcgatttcggcc 191  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  21957780 gcttaatagcagttttagccccctaacttttccaaagttgcgattttggcc 21957730  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 2016790 - 2016843
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccc 192  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||| |||||    
T  2016790 aggcttgatagcagttttagccccctaacttttccaaagttgcgattttggccc 2016843  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 14449599 - 14449548
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcc 191  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||| ||||    
T  14449599 ggcttaatagtagttttagccccctaacttttccaaagttgcgattttggcc 14449548  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 51362539 - 51362594
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||| |||||||||||||||||||||| |  |||||||||| |||||||||||    
T  51362539 ttaatagtagttttagccccctaacttttctaaagttgcgattttggccccctaag 51362594  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 49185571 - 49185628
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||| |||||||||||| |||  |||||||||| |||||||||||    
T  49185571 ggcttaatagcagttttaaccccctaactttccca-agttgcgattttggccccctaag 49185628  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 12719771 - 12719702
Alignment:
Q  129 attaagaaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||| ||| ||||||||||||||||||| |||||||||||| |||  ||||  |||| |||||||||||    
T  12719771 attaaaaaaaaggcttaatagcagttttaaccccctaactttcccaaagttgatattttggccccctaag 12719702  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 1420860 - 1420800
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||| ||||||| |||  ||| |||||| || ||||||||    
T  1420860 taggcttaatagcagttttagccccttaactttcccaaagttacgattttggtcccctaag 1420800  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 2836897 - 2836953
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccc 194  Q
    ||||||||||| |||||||| ||||||||||||||||  | |||||||| |||||||    
T  2836897 taggcttaataacagttttaaccccctaacttttccaaagctgcgattttggccccc 2836953  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 4796354 - 4796318
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttcca 174  Q
    |||||||||||||||||||||||||||||||| ||||    
T  4796354 taggcttaatagcagttttagccccctaacttatcca 4796318  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 14016722 - 14016778
Alignment:
Q  142 cttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||| |||| ||||||    
T  14016722 cttaatagcggttttagccccctaactttcccaaagttgcgattttggcctcctaag 14016778  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 166
Target Start/End: Complemental strand, 6207495 - 6207464
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaa 166  Q
    ||||||||||||||||||||||||||||||||    
T  6207495 aaataggcttaatagcagttttagccccctaa 6207464  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 21871696 - 21871641
Alignment:
Q  142 cttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||| ||||||||||||||||||| ||  |||||||||| | ||||||||    
T  21871696 cttaatagcaattttagccccctaactttttcaaagttgcgattttgaccccctaa 21871641  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 21927557 - 21927502
Alignment:
Q  142 cttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    |||||||||| ||||||||||||||||||| ||  |||||||||| | ||||||||    
T  21927557 cttaatagcaattttagccccctaactttttcaaagttgcgattttgaccccctaa 21927502  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 50769366 - 50769421
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||| |||||||||||| |||  |||||||||| | |||||||||    
T  50769366 ttaatagcagttttatccccctaactttcccaaagttgcgattttgcccccctaag 50769421  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 14060760 - 14060814
Alignment:
Q  144 taatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||| ||||||||||||| ||  |||||||||| | |||||||||    
T  14060760 taatagcagttttaaccccctaactttttcaaagttgcgattttgaccccctaag 14060814  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 19909172 - 19909226
Alignment:
Q  139 aggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcccc 193  Q
    ||||||||||||||||||| ||||||||||||  ||  |||||||||| ||||||    
T  19909172 aggcttaatagcagttttaaccccctaactttctcaaagttgcgattttggcccc 19909226  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 20112463 - 20112409
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccc 194  Q
    ||||||||| |||||||||||  ||||||||||||  |||||||||| |||||||    
T  20112463 ggcttaataacagttttagccttctaacttttccaaagttgcgattttggccccc 20112409  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 43074880 - 43074834
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgattt 186  Q
    |||||||||||| |||||||||||||||||| |||  ||||||||||    
T  43074880 ggcttaatagcaattttagccccctaactttcccaaagttgcgattt 43074834  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 2017104 - 2017051
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggcc 191  Q
    ||||||||||||||||||||||||| ||||||| | |  |||||||||| ||||    
T  2017104 taggcttaatagcagttttagccccataactttcctaaagttgcgattttggcc 2017051  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 11824185 - 11824218
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttt 170  Q
    ||||||||||||||||||||| ||||||||||||    
T  11824185 ataggcttaatagcagttttaaccccctaacttt 11824218  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 44356713 - 44356653
Alignment:
Q  137 ataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||||||||||| |||||||||||  ||  |||||||||| |||| ||||||    
T  44356713 ataggcttaatagcagttttag-cccctaactttctcaaagttgcgattttggccgcctaag 44356653  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 50769675 - 50769618
Alignment:
Q  140 ggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||| ||||||||| |||||||||||||| |   |||||||||| ||||||||||    
T  50769675 ggcttaaaagcagttttcgccccctaacttttacgaagttgcgattttggccccctaa 50769618  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 2653948 - 2654008
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccct 195  Q
    |||| ||||||||||||||||| ||| |||||||||| |   |||||||||| ||||||||    
T  2653948 aaattggcttaatagcagtttttgcctcctaacttttacgaagttgcgattttggccccct 2654008  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 4796034 - 4796094
Alignment:
Q  138 taggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    |||||||||||||| |||||| |||||||||||| ||   ||||||||| ||||| |||||    
T  4796034 taggcttaatagcatttttagtcccctaactttttcaaaattgcgattttggccctctaag 4796094  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 8070630 - 8070662
Alignment:
Q  142 cttaatagcagttttagccccctaacttttcca 174  Q
    |||||||||||||||| ||||||||||||||||    
T  8070630 cttaatagcagttttaaccccctaacttttcca 8070662  T

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Target: scaffold1458 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 1466 - 1529
Alignment:
Q  135 aaataggcttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaag 198  Q
    ||||||||||||||||||||||||||||||||||||  ||  |||| ||||| |||||||||||    
T  1466 aaataggcttaatagcagttttagccccctaactttcacaaagttgagattttggccccctaag 1529  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 19652 - 19600
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccct 195  Q
    |||||||||||||||| |||||||||||| ||  |||||||||| ||||||||    
T  19652 ttaatagcagttttagtcccctaactttttcaaagttgcgattttggccccct 19600  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 9558 - 9612
Alignment:
Q  143 ttaatagcagttttagccccctaacttttccatggttgcgatttcggccccctaa 197  Q
    ||||||| |||||||||||| |||||||||||  |||| ||||| ||||||||||    
T  9558 ttaatagtagttttagccccttaacttttccaaagttgtgattttggccccctaa 9612  T

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Target: scaffold0725 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 6747 - 6719
Alignment:
Q  138 taggcttaatagcagttttagccccctaa 166  Q
    |||||||||||||||||||||||||||||    
T  6747 taggcttaatagcagttttagccccctaa 6719  T

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