View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_9 (Length: 552)
Name: NF18704_low_9
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 10688088 - 10688446
Alignment:
| Q |
16 |
ataagaaagtcaatagaacattcaagctgacatgaattcctatgtgtagaaacagtgagttgatcaaggatctatgaatattggaaattgccaaatcaag |
115 |
Q |
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| T |
10688088 |
ataagaaagtcaatagaacattcaagctgacatgaattcctatatctagaaataatgagttgatcaagcatctatgaatattggaaattgccaaatcaag |
10688187 |
T |
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| Q |
116 |
aacctcagttcaagttctttggaaattgccaataccacaacacttgcacaattattctccttgtatattttccatacactttcctcattccccaactttt |
215 |
Q |
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| T |
10688188 |
aacctcagttcaagttctttggaaattgccaatcccacaacacttgcacaattattctccttgtatattttccataca--------attccccaactttt |
10688279 |
T |
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| Q |
216 |
ctgaaaaatgttttctcaaagtaatagtaataattttctatgcctataaatactactttttgatcagtcagattcacattctgggttcactatctaaaaa |
315 |
Q |
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| T |
10688280 |
ctgaaaaatgttttctcatagtaatagtaataattttctatgcctataaatactactttttgatcaatcagattcacattctgggttcactacctaaaaa |
10688379 |
T |
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| Q |
316 |
ctccaaaagagaaaaatgatgaattttcattcacttcgtccaccttcttcatcatcattcacttctt |
382 |
Q |
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| T |
10688380 |
ctccaaaagagaaaaatgatgaattttcattcacttcgtccaccttcttcatcatcattcacttctt |
10688446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 455 - 533
Target Start/End: Original strand, 10688550 - 10688628
Alignment:
| Q |
455 |
ttttaaaacgagaaatatgattaaccataaccaaacacagttcaagtccaccaaagtaaagttcagttctcctttctag |
533 |
Q |
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| T |
10688550 |
ttttaaaacgagaaatatgattaaccataaccaaacacagttcaagtccaccaaagtaaagttcagttctcctttctag |
10688628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 5444799 - 5445011
Alignment:
| Q |
16 |
ataagaaagtcaatagaacattcaagctgacatgaattcctatgtgtagaaacagtgagttgatcaaggatctatgaatattggaaattgccaaatcaag |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
5444799 |
ataagaaagtcaataggacattcaagctgacatgaattcctatgtgtagaaataatgagttgatcaaggatcaatgaatatgggaaattgccaaatccct |
5444898 |
T |
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| Q |
116 |
-aacctcagttcaagttctttggaaattgccaataccacaacacttgcacaattattctccttgtatattttccatacactttcctcattccccaacttt |
214 |
Q |
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| T |
5444899 |
caacctcagtccaagttctttggaaattgccaatccctcaacacttgcccaattattctccgtgtatattttccatactccttcctcattccccaacttt |
5444998 |
T |
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| Q |
215 |
tctgaaaaatgtt |
227 |
Q |
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| T |
5444999 |
tctgaaaaatgtt |
5445011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 5441458 - 5441376
Alignment:
| Q |
16 |
ataagaaagtcaatagaacattcaagctgacatgaattcctatgtgtagaaacagtgagttgatcaaggatctatgaatattg |
98 |
Q |
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||||||||||||| || ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
5441458 |
ataagaaagtcaagaggacattcaagctgacatgaattccaatgtgtagaaataatgagttgatcaaggatcaatgaatattg |
5441376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 5445016 - 5445069
Alignment:
| Q |
254 |
tatgcctataaatactactttttgatcagtcagattcacattctgggttcacta |
307 |
Q |
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|||||||||||| ||||| ||||||||| |||||| || ||||| ||||||||| |
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| T |
5445016 |
tatgcctataaaaactaccttttgatcaatcagatccatattctcggttcacta |
5445069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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