View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18705_high_10 (Length: 361)
Name: NF18705_high_10
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 346
Target Start/End: Complemental strand, 7828371 - 7828022
Alignment:
| Q |
6 |
gtccaagaatatttttctctctagttcagatagactatagtagcttatttcaagtacaccttgaatatcagcatgtggaaccttcctatattttcccaag |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828371 |
gtccaaaaatatttttctctctagttcagatagactatagtagcttatttcaagtacaccttgaatatcagcatgtggaaccttcctatattttcccaag |
7828272 |
T |
|
| Q |
106 |
tcaattcctattcttctatgcttttacccttcaaattggaacctattacacataaagctaatggtatagaatttgc-aaagttcgctgcacgactagcca |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7828271 |
tcaattcccattcttctatgcttttacccttcaaattggaacctattacacataaagctaatggtatagaatttgcaaaagttcgctgcacgactagcca |
7828172 |
T |
|
| Q |
205 |
tatattcaattttttctggtaggtctgttaacaccaaaggcattccaacaaaagagttcgagtgagtcacaatcatttagtgcctccatttta------- |
297 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828171 |
tatattcaaatttttctggtaggtctgttaacaccaaaggcattccaacaaaagagttcgagtgagtcacaatcatttagtgcctccattttaaatttct |
7828072 |
T |
|
| Q |
298 |
-aatttcagcatcatgataatctaacacagtttcatcccttgttgttatt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828071 |
caatttcagcatcatgataatctaacacagtttcatcccttgttgttatt |
7828022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 7815415 - 7815293
Alignment:
| Q |
46 |
tagcttatttcaagtacaccttgaatatcagcatgtggaaccttcctatattttcccaagtcaa-ttcctattcttctatgcttttacccttcaaattgg |
144 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||||||||| ||||| |||| |||| |||| ||||||||| ||| | ||||||||||||| |
|
|
| T |
7815415 |
tagcttatttccagtgcaccttgaataccagcatgtggaacctacctatgtttttccaaatcaatttcctattc-------cttctccccttcaaattgg |
7815323 |
T |
|
| Q |
145 |
aaccta-ttacacataaagctaatggtata |
173 |
Q |
| |
|
|||||| |||| |||||| |||||||||| |
|
|
| T |
7815322 |
aacctatttactcataaatttaatggtata |
7815293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 7824906 - 7824841
Alignment:
| Q |
46 |
tagcttatttcaagtacaccttgaatatcagcatgtggaaccttcctatattttcccaagtcaatt |
111 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||||||||| ||||| |||| |||| |||||| |
|
|
| T |
7824906 |
tagcttatttccagtgcaccttgaataccagcatgtggaacctacctatgtttttccaaatcaatt |
7824841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 7754524 - 7754649
Alignment:
| Q |
45 |
gtagcttatttcaagtacaccttgaatatcagcatgtggaaccttcctatattttcccaagt-caat-tcctattcttctatgcttttacccttcaaatt |
142 |
Q |
| |
|
|||||| ||||| | |||||||||||| ||||||| ||| ||||| |||||||| | |||| |||| ||| ||||||| ||||||||||| ||||| || |
|
|
| T |
7754524 |
gtagctgatttccattacaccttgaatctcagcatctgggacctttctatattt-ctgaagttcaatatcccattcttcaatgcttttacctttcaagtt |
7754622 |
T |
|
| Q |
143 |
ggaacctattacacataaagctaatgg |
169 |
Q |
| |
|
||| |||||||| | |||||| ||||| |
|
|
| T |
7754623 |
ggatcctattactcttaaagccaatgg |
7754649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 7761609 - 7761731
Alignment:
| Q |
31 |
tcagatagactatagtagcttatttcaagtacaccttgaatatcagcatgtggaaccttcctatattttcccaagtcaat-tcctattcttctatgcttt |
129 |
Q |
| |
|
|||||||| | || |||||| ||||| | |||||| ||||| ||||||| ||||||||| |||||| | ||| ||||| ||| |||| |||||||| | |
|
|
| T |
7761609 |
tcagataggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatatcccattcctctatgctct |
7761708 |
T |
|
| Q |
130 |
tacccttcaaattggaacctatt |
152 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
7761709 |
tacctttcaaattggatcctatt |
7761731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 7802967 - 7802902
Alignment:
| Q |
46 |
tagcttatttcaagtacaccttgaatatcagcatgtggaaccttcctatattttcccaagtcaatt |
111 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||| ||||| |||| |||| |||||| |
|
|
| T |
7802967 |
tagcttatttccggtgcaccttgaataccagcatgtggaacctacctatgtttttccaaatcaatt |
7802902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University