View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18705_high_3 (Length: 547)

Name: NF18705_high_3
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18705_high_3
NF18705_high_3
[»] chr8 (9 HSPs)
chr8 (168-539)||(37010180-37010550)
chr8 (347-404)||(29093584-29093641)
chr8 (309-405)||(35574609-35574705)
chr8 (309-384)||(12736064-12736139)
chr8 (315-412)||(33897753-33897850)
chr8 (347-407)||(6630506-6630566)
chr8 (321-381)||(40700868-40700928)
chr8 (337-398)||(7405534-7405595)
chr8 (337-437)||(6630319-6630419)
[»] chr4 (4 HSPs)
chr4 (337-540)||(22050735-22050935)
chr4 (286-533)||(20512667-20512915)
chr4 (337-437)||(25062357-25062457)
chr4 (347-437)||(22050900-22050990)
[»] chr1 (14 HSPs)
chr1 (286-482)||(2534308-2534504)
chr1 (313-409)||(68111-68207)
chr1 (315-408)||(52432677-52432770)
chr1 (309-380)||(35956993-35957064)
chr1 (315-414)||(44330479-44330578)
chr1 (344-434)||(2534199-2534289)
chr1 (340-404)||(67967-68031)
chr1 (320-384)||(7749024-7749088)
chr1 (323-414)||(3367806-3367897)
chr1 (313-380)||(5500812-5500878)
chr1 (353-404)||(49897924-49897975)
chr1 (286-404)||(34601580-34601697)
chr1 (364-401)||(42819568-42819605)
chr1 (286-401)||(38839634-38839747)
[»] chr7 (9 HSPs)
chr7 (308-414)||(757902-758008)
chr7 (309-418)||(23944086-23944195)
chr7 (287-357)||(4674896-4674966)
chr7 (287-383)||(27651501-27651595)
chr7 (310-378)||(34891544-34891612)
chr7 (315-404)||(32138856-32138945)
chr7 (220-265)||(43208668-43208713)
chr7 (316-400)||(44754928-44755012)
chr7 (337-417)||(44755109-44755189)
[»] chr5 (17 HSPs)
chr5 (309-400)||(2243290-2243381)
chr5 (286-437)||(40483669-40483819)
chr5 (309-414)||(973121-973226)
chr5 (340-417)||(17739907-17739984)
chr5 (289-408)||(972874-972993)
chr5 (410-540)||(973063-973194)
chr5 (307-400)||(2822597-2822690)
chr5 (315-418)||(17736710-17736813)
chr5 (313-412)||(37077774-37077873)
chr5 (313-437)||(7215405-7215529)
chr5 (347-414)||(7982214-7982281)
chr5 (319-437)||(41264393-41264512)
chr5 (316-414)||(7215257-7215354)
chr5 (317-379)||(22780339-22780401)
chr5 (286-351)||(972816-972881)
chr5 (330-403)||(5205509-5205582)
chr5 (337-402)||(39808204-39808269)
[»] chr2 (16 HSPs)
chr2 (315-418)||(16576264-16576367)
chr2 (285-379)||(2248931-2249025)
chr2 (286-416)||(38576895-38577025)
chr2 (337-416)||(34176742-34176821)
chr2 (316-437)||(28282667-28282788)
chr2 (314-381)||(13712912-13712979)
chr2 (315-384)||(35371127-35371196)
chr2 (355-404)||(38576747-38576796)
chr2 (319-407)||(16576437-16576525)
chr2 (285-361)||(34176629-34176705)
chr2 (313-437)||(35370412-35370535)
chr2 (313-403)||(9050096-9050186)
chr2 (356-437)||(25606423-25606504)
chr2 (313-437)||(9050232-9050356)
chr2 (313-385)||(16863470-16863542)
chr2 (355-407)||(40374076-40374128)
[»] chr6 (3 HSPs)
chr6 (315-437)||(32047190-32047312)
chr6 (319-414)||(32342620-32342715)
chr6 (338-415)||(26236615-26236692)
[»] chr3 (7 HSPs)
chr3 (313-415)||(39341213-39341315)
chr3 (369-443)||(54028619-54028693)
chr3 (309-398)||(42091767-42091856)
chr3 (313-415)||(54437820-54437922)
chr3 (331-407)||(20519431-20519507)
chr3 (315-391)||(54437653-54437729)
chr3 (317-384)||(20519286-20519353)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 168 - 539
Target Start/End: Complemental strand, 37010550 - 37010180
Alignment:
Q  168 agctagtttaacataccagattgacagactcgacatattttaccatctttaaatggttttttctacattgtcccttgatgatttgggggtagtttatctc 267  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||||||| |||    
T  37010550 agctagtttaacataccaggttgacatactcgacatattttaccatctttaaatggttttttctacgttgccatttgatgatttgggggtagtttacctc 37010451  T
Q  268 tttttaagnnnnnnnnttattttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacat 367  Q
    ||| ||||        | ||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  37010450 tttctaagaaaaaat-tcatttttttcatctttattttaaaaattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacat 37010352  T
Q  368 gtgatctccatctccttcattccataatcgaatcatatttattattaggggcaatttatcctcaattcattaaatgtaatgtatcttggcttttcttacg 467  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| || ||||||||| | ||||||||||    
T  37010351 gtgatctctatctccttcattccataatcgaatcatatttgttattaggggcaatttacccccaattcattaaaggtgatgtatctttgtttttcttacg 37010252  T
Q  468 attagttatcattttcatatcaaagtcataatgtttcttcgtatagctcattcaacatgtgctcttcatctc 539  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  37010251 attagttatcattttcatatcaaaatcataaagtttctttgtatagctcattcaacatgtgatcttcatctc 37010180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 29093584 - 29093641
Alignment:
Q  347 ttcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcata 404  Q
    ||||| ||||||||| ||||||||||||||||||| ||| |||||||||| |||||||    
T  29093584 ttcatctccttcattcaacatgtgatctccatctctttcgttccataatcaaatcata 29093641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 35574705 - 35574609
Alignment:
Q  309 aattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatat 405  Q
    |||||||||| |||||||||  || || |||||| || ||||| || |||||| ||||||| ||||||||||  ||| ||||| |||||||||||||    
T  35574705 aattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatcatat 35574609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 384
Target Start/End: Original strand, 12736064 - 12736139
Alignment:
Q  309 aattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctcctt 384  Q
    ||||||||||||||| ||||  || || ||||||||| ||||| |||||| || |||||||||| |||||||||||    
T  12736064 aattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctcctt 12736139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 33897753 - 33897850
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattat 412  Q
    |||| ||||||||| |||||| |||||| || || |||||||||||| ||||||| | |||||| |  ||| || || ||||||||| ||||||||||    
T  33897753 ttactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgtaacctccatttatttcgtttcaaaatcgaatcttatttattat 33897850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 6630566 - 6630506
Alignment:
Q  347 ttcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatattt 407  Q
    ||||| |||||||||||||| |||||||||||||| ||| ||| ||||| ||||| |||||    
T  6630566 ttcatctccttcatttaacaagtgatctccatctcattcgttctataattgaatcctattt 6630506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 40700868 - 40700928
Alignment:
Q  321 ttttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctc 381  Q
    |||||||| ||||||||| |||||| ||||| |||||||||||||||  ||||| ||||||    
T  40700868 ttttcatctcaaaaatattaaactttttcatatccttcatttaacatacgatcttcatctc 40700928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 7405595 - 7405534
Alignment:
Q  337 atcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcga 398  Q
    ||||||| | ||||| |||| |||| |||||||||||| |||||| ||| ||||||||||||    
T  7405595 atcaaacgtcttcatctcctacattcaacatgtgatcttcatctcgttcgttccataatcga 7405534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 437
Target Start/End: Complemental strand, 6630419 - 6630319
Alignment:
Q  337 atcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattaggggcaatttatcctcaattca 436  Q
    ||||||||| ||||| |  |||||| |||||||| | ||||||||||||||| || |||| |||| || || | |||||||| || |||  |||||||||    
T  6630419 atcaaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattca 6630320  T
Q  437 t 437  Q
    |    
T  6630319 t 6630319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 337 - 540
Target Start/End: Original strand, 22050735 - 22050935
Alignment:
Q  337 atcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattaggggcaatttatcctcaattca 436  Q
    ||||||||| |||||||||||||||||||||||||||||||   ||||  || |||||||||||||||||| ||||| |||| ||||||||| |||||||    
T  22050735 atcaaacttcttcatttccttcatttaacatgtgatctcca---cctttgtttcataatcgaatcatatttgttattgggggtaatttatccccaattca 22050831  T
Q  437 ttaaatgtaatgtatcttggcttttcttacgattagttatcattttcatatcaaagtcataatgtttcttcgtatagctcattcaacatgtgctcttcat 536  Q
    ||||  ||||||||| | || ||||||||| ||||||||||||||| || | |||  ||  | |||||||| | |   |||||||||||||| |||||||    
T  22050832 ttaagggtaatgtatttcggtttttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcat 22050931  T
Q  537 ctca 540  Q
    ||||    
T  22050932 ctca 22050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 286 - 533
Target Start/End: Complemental strand, 20512915 - 20512667
Alignment:
Q  286 attttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttc 385  Q
    ||||||||||||| |||||| ||||| | ||  ||||||||||  | ||| ||||||||| ||||| | ||||||||||||||| |||||||| ||||||    
T  20512915 attttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttc 20512816  T
Q  386 attccataatcgaatcatatttattattaggggcaatttatcctcaattcattaaatgtaatgtatcttgg-cttttcttacgattagttatcattttca 484  Q
     || |||||||||||||||||| ||| || ||  |||||| |  |||||||||||  ||||||||| ||||  ||||||||| |||||||||| ||||||    
T  20512815 gtttcataatcgaatcatatttgttagtaaggataatttacctccaattcattaagggtaatgtattttggttttttcttacaattagttatctttttca 20512716  T
Q  485 tatcaaagtcataatgtttcttcgtatagctcattcaacatgtgctctt 533  Q
    | |||||  ||| | |||||||| |||   ||||| |||||||| ||||    
T  20512715 tctcaaaaacattaagtttcttcatattcttcattgaacatgtgatctt 20512667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 437
Target Start/End: Original strand, 25062357 - 25062457
Alignment:
Q  337 atcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattaggggcaatttatcctcaattca 436  Q
    ||||||||| ||||| | ||||||| |||||||||||| |||||||||  |||||||||| |||| || || |||||||||| || ||| ||||||||||    
T  25062357 atcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctcaattca 25062456  T
Q  437 t 437  Q
    |    
T  25062457 t 25062457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 437
Target Start/End: Original strand, 22050900 - 22050990
Alignment:
Q  347 ttcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattaggggcaatttatcctcaattcat 437  Q
    ||||| ||||||||| |||||||||||| |||||| ||| || || ||||||||||||||||| |||| ||| || ||| || ||||||||    
T  22050900 ttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcattaagggtaaattacccccaattcat 22050990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 286 - 482
Target Start/End: Complemental strand, 2534504 - 2534308
Alignment:
Q  286 attttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttc 385  Q
    ||||||||||||| |||||| ||||| | |||||| ||||||| |||||| ||||||||| ||||| ||||| ||||  |||  ||||| ||||||||||    
T  2534504 attttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatctccttaatttcgcataagatcttcatctccttc 2534405  T
Q  386 attccataatcgaatcatatttattattaggggcaatttatcctcaattcattaaatgtaatgtatcttgg-cttttcttacgattagttatcatttt 482  Q
    ||| ||| |||  |||||||||||||||||||  |||||| ||| |||||||| |  ||||||||| ||||  ||||| ||| |||| ||||||||||    
T  2534404 atttcattatccgatcatatttattattagggttaatttaccct-aattcattgagggtaatgtattttggttttttcgtacaattaattatcatttt 2534308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 409
Target Start/End: Original strand, 68111 - 68207
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttat 409  Q
    |||||||||||| ||  ||| || ||| ||||| ||||| ||||||||||||||||||||||||||||  ||| ||||| |||||||| ||||||||    
T  68111 agttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaatgatatttat 68207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 52432677 - 52432770
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatattta 408  Q
    |||||||||||||| ||| || || |||||| ||||| |||||||||||||| |||||||||||||  ||  ||| |||||||||| |||||||    
T  52432677 ttaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatcgaattatattta 52432770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 35956993 - 35957064
Alignment:
Q  309 aattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatct 380  Q
    ||||| |||||||||| ||| |||||| ||||||||| | |||||| || |||||| |||||||||||||||    
T  35956993 aattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatct 35957064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 414
Target Start/End: Original strand, 44330479 - 44330578
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattatta 414  Q
    |||||||||||||  |||||| |||| |||| ||||||||| | |||  |||||||||||| ||||| || |||| | ||| |||||||| |||||||||    
T  44330479 ttaccattttcatatcaaaaacatcacacttcttcatttccattattctacatgtgatctctatctcatttattcaagaattgaatcatacttattatta 44330578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 434
Target Start/End: Complemental strand, 2534289 - 2534199
Alignment:
Q  344 ttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattaggggcaatttatcctcaatt 434  Q
    |||||||| || ||||||||| || |||||||||||| ||||||| || ||| || |||||||||| ||||||   || ||||||||||||    
T  2534289 ttattcatctctttcatttaatatatgatctccatcttcttcatttcagaattgactcatatttatcattaggaataaattatcctcaatt 2534199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 67967 - 68031
Alignment:
Q  340 aaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcata 404  Q
    |||||| ||||| |||||||||  ||||||||||| |||||| ||||||||| ||||| ||||||    
T  67967 aaacttcttcatatccttcattctacatgtgatcttcatctctttcattccaaaatcggatcata 68031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 7749024 - 7749088
Alignment:
Q  320 attttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctcctt 384  Q
    ||||||||| ||| || |||||| || ||||||| |||  |||||||||||||||||||||||||    
T  7749024 attttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatctcctt 7749088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 414
Target Start/End: Original strand, 3367806 - 3367897
Alignment:
Q  323 ttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattatta 414  Q
    |||||| ||| || |||||| || ||||| || |||||| ||||||||||||||||||| ||| ||||| |||   ||||||||||| ||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcatta 3367897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 5500878 - 5500812
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatct 380  Q
    |||||||||||| ||| |||||| |||||| || |||||||| || ||| ||||||||||||||||||    
T  5500878 agttaccatttttatctcaaaaacatcaaatttcttcatttcatt-attcaacatgtgatctccatct 5500812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 49897924 - 49897975
Alignment:
Q  353 tccttcatttaacatgtgatctccatctccttcattccataatcgaatcata 404  Q
    ||||||||| ||||||||||||||||||||||  ||| | ||||||||||||    
T  49897924 tccttcattcaacatgtgatctccatctcctttgttctagaatcgaatcata 49897975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 404
Target Start/End: Complemental strand, 34601697 - 34601580
Alignment:
Q  286 attttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttc 385  Q
    ||||||||||||| |||| | |  ||||||||  ||||||||| |||||| ||||||| | ||||| | ||| ||| |||||||||| | ||||||||||    
T  34601697 attttcttcatctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacatgtgatattcatctccttc 34601599  T
Q  386 attccataatcgaatcata 404  Q
     ||  | ||||||||||||    
T  34601598 cttataaaatcgaatcata 34601580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 42819568 - 42819605
Alignment:
Q  364 acatgtgatctccatctccttcattccataatcgaatc 401  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  42819568 acatgtgatctcaatctccctcattccataatcgaatc 42819605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 401
Target Start/End: Complemental strand, 38839747 - 38839634
Alignment:
Q  286 attttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttc 385  Q
    ||||| ||||||| |||| | | |||||||||  ||||||||| ||| || ||||||| | ||||| | |||||||  |||||||||||  |||| ||||    
T  38839747 atttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtgatcttgatcttcttc 38839650  T
Q  386 attccataatcgaatc 401  Q
     ||||| |||||||||    
T  38839649 gttccacaatcgaatc 38839634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 758008 - 757902
Alignment:
Q  308 aaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatattt 407  Q
    |||||||||| |||||||||| ||||||| | ||| ||||| || ||||||||| |||||||||||| |||||||||||||| ||||| ||||| || ||    
T  758008 aaattagttatcattttcatctcaaaaatcttaaatttatttatctccttcattcaacatgtgatcttcatctccttcattctataattgaatcctactt 757909  T
Q  408 attatta 414  Q
    |||||||    
T  757908 attatta 757902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 418
Target Start/End: Original strand, 23944086 - 23944195
Alignment:
Q  309 aattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatattta 408  Q
    |||||||| |||||||||||  || || ||||||||| ||| | || |||||| |||||||||| ||||||||||| |||||| |||||||||||| |||    
T  23944086 aattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaatcatactta 23944185  T
Q  409 ttattagggg 418  Q
    | || |||||    
T  23944186 tcatcagggg 23944195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 4674896 - 4674966
Alignment:
Q  287 ttttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttcctt 357  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| ||| || |||||||||||| || |||||    
T  4674896 ttttctttatctttatttttgaaattagttaccattttcatctcaagaaaatcaaacttatttatctcctt 4674966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 383
Target Start/End: Complemental strand, 27651595 - 27651501
Alignment:
Q  287 ttttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctcct 383  Q
    |||||||||||| |||||| | ||| ||| |||||||||||| ||| || |||||||  | |||| ||||||||| |||||||||| ||||||||||    
T  27651595 ttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac-aactcatctccttcattcaacatgtgatatccatctcct 27651501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 34891544 - 34891612
Alignment:
Q  310 attagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccat 378  Q
    |||||||| |||||| ||| ||| || |||||| || ||||| ||||||||| ||||||||||||||||    
T  34891544 attagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccat 34891612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 32138945 - 32138856
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcata 404  Q
    ||||||||||||||  || || |||||| || ||||| |||||| || ||||||| |||||||||| |||| ||| | || |||||||||    
T  32138945 ttaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatcttcttcgttctagaagcgaatcata 32138856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 43208668 - 43208713
Alignment:
Q  220 atggttttttctacattgtcccttgatgatttgggggtagtttatc 265  Q
    ||||||||||||||||| ||||||||||| ||| ||||| ||||||    
T  43208668 atggttttttctacattatcccttgatgaattgagggtaatttatc 43208713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 400
Target Start/End: Original strand, 44754928 - 44755012
Alignment:
Q  316 taccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaat 400  Q
    ||||||||||||  | | || ||||||||| ||| |||  |||||| |||||||||||| |||||||||   |||||||||||||    
T  44754928 taccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgtgatcttcatctcctttgatccataatcgaat 44755012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 44755109 - 44755189
Alignment:
Q  337 atcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattaggg 417  Q
    ||||||||| ||||| || ||  || ||||||| |||| ||||| |||||||  | ||||||||||||||| |||||||||    
T  44755109 atcaaacttcttcatatcatttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattaggg 44755189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 2243381 - 2243290
Alignment:
Q  309 aattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaat 400  Q
    |||||||||||||||||||| ||| || ||||||||| ||||| ||||||||| |||||||||||||||||| |||| ||| | ||||||||    
T  2243381 aattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaat 2243290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 437
Target Start/End: Original strand, 40483669 - 40483819
Alignment:
Q  286 attttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttc 385  Q
    ||||| ||||||| |||| | |||| || |||| |||||||||  ||||| ||||||||| ||||| ||  ||||| |||||||||||| |||||| |||    
T  40483669 atttttttcatctttattcttaaaaatatttactattttcatct-aaaaacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcattc 40483767  T
Q  386 attccataatcgaatcatatttattattaggggcaatttatcctcaattcat 437  Q
     ||||| |||||||||||| |||| ||| |||| |||||| |||||||||||    
T  40483768 gttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcat 40483819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 414
Target Start/End: Original strand, 973121 - 973226
Alignment:
Q  309 aattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatattta 408  Q
    ||||||||| |||||| ||| |||||| || ||| || ||||| ||||| ||| |||||||||||| |||||| |||||| || ||| ||||||||||||    
T  973121 aattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattgaatcatattta 973220  T
Q  409 ttatta 414  Q
    | ||||    
T  973221 tcatta 973226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 17739907 - 17739984
Alignment:
Q  340 aaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattaggg 417  Q
    |||||| ||||| | |||||||||||||||||| | |||||||||| ||||| ||||||||| || ||||||||||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatcctacttattattaggg 17739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 972874 - 972993
Alignment:
Q  289 ttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcatt 388  Q
    |||||||||| ||||||  |||| |||| ||||||||||| ||| || |||||| || ||||| || |||||||||||||| |||| |||  ||||  ||    
T  972874 ttcttcatctttatttttgaaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgttatcttcataccctttgtt 972973  T
Q  389 ccataatcgaatcatattta 408  Q
     ||||||| |||||||||||    
T  972974 tcataatcaaatcatattta 972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 540
Target Start/End: Original strand, 973063 - 973194
Alignment:
Q  410 tattaggggcaatttatcctcaattcattaaatgtaatgtatcttgg-cttttcttacgattagttatcattttcatatcaaagtcataatgtttcttcg 508  Q
    ||||||||| ||||||||| |||||||||||  ||||||||| ||||  ||||||||| ||||||||||||||| || |||||  ||| |  |||||||     
T  973063 tattaggggtaatttatccccaattcattaatggtaatgtatgttggttttttcttacaattagttatcatttttatctcaaaaacattaaatttcttca 973162  T
Q  509 tatagctcattcaacatgtgctcttcatctca 540  Q
    | |   | |||||||||||| |||||||||||    
T  973163 tctcctttattcaacatgtgatcttcatctca 973194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 400
Target Start/End: Complemental strand, 2822690 - 2822597
Alignment:
Q  307 aaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaat 400  Q
    ||||| || ||||||||||||  |||||| || ||| || ||||| |||||| |||||| ||||||||||||||| |||||| || ||||||||    
T  2822690 aaaatcagctaccattttcatttcaaaaacattaaatttcttcatctccttcctttaacgtgtgatctccatctcattcatttcagaatcgaat 2822597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 418
Target Start/End: Complemental strand, 17736813 - 17736710
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattatta 414  Q
    |||||||||||||| ||| ||||| |||||| ||||| | ||||| | ||||||||||||| |||| |||| ||| | ||||||||| || || | ||||    
T  17736813 ttaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatta 17736714  T
Q  415 gggg 418  Q
    ||||    
T  17736713 gggg 17736710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 412
Target Start/End: Original strand, 37077774 - 37077873
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattat 412  Q
    ||||| |||||||||| |||||| |||||| || || ||||  |||||| ||||||||||||| || || |||||| || ||| ||||| ||||||||||    
T  37077774 agttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattgaatcttatttattat 37077873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 437
Target Start/End: Complemental strand, 7215529 - 7215405
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattat 412  Q
    |||||| ||||||||  ||| || || |||||| ||||| | ||||||| |||||||||||| |||||| ||| ||||| || || |||||| || ||||    
T  7215529 agttactattttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttat 7215430  T
Q  413 taggggcaatttatcctcaattcat 437  Q
    |||  | || |||| ||||||||||    
T  7215429 tagatgtaaattattctcaattcat 7215405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 7982281 - 7982214
Alignment:
Q  347 ttcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattatta 414  Q
    ||||| ||||||||| |||||||||| || |||||||||||| || ||| |||| |||||||| ||||    
T  7982281 ttcatctccttcattcaacatgtgatttctatctccttcatttcagaattgaataatatttatcatta 7982214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 41264393 - 41264512
Alignment:
Q  319 cattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcatt-ccataatcgaatcatatttattattaggg 417  Q
    |||||||||| ||| || || |||||| ||||| |  |||||| |||||||||||| |||||| ||| ||  ||||||||||||||| || ||||||| |    
T  41264393 cattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgttatcataatcgaatcataattgttattagag 41264492  T
Q  418 gcaatttatcctcaattcat 437  Q
    | || ||| ||| |||||||    
T  41264493 gtaaattaaccttaattcat 41264512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 414
Target Start/End: Complemental strand, 7215354 - 7215257
Alignment:
Q  316 taccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattatta 414  Q
    ||||||||||||| ||| || ||||||||| ||   ||| |||||| || |||||||||||||||  ||||||| | ||| ||||||||||||| ||||    
T  7215354 taccattttcatctcaagaacatcaaacttcttttcttc-ttcattgaatatgtgatctccatctttttcattctaaaattgaatcatatttatcatta 7215257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 22780401 - 22780339
Alignment:
Q  317 accattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatc 379  Q
    |||||||||||| |||||| |  |||||| ||||| ||||||||| |||||||||||| ||||    
T  22780401 accattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatc 22780339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 972816 - 972881
Alignment:
Q  286 attttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcat 351  Q
    ||||| ||| ||| |||||| ||||||||||| |||||||||| ||| || ||||||||| |||||    
T  972816 atttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcat 972881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 5205582 - 5205509
Alignment:
Q  330 caaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcat 403  Q
    |||||| ||||||||| || || ||||| ||| ||||||||||||||||||  ||| ||  |||||||||||||    
T  5205582 caaaaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcgttttataatcgaatcat 5205509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 39808269 - 39808204
Alignment:
Q  337 atcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatca 402  Q
    ||||||||| ||||| ||||||||||||||| ||||||   |||| ||||||| | ||||||||||    
T  39808269 atcaaactttttcatctccttcatttaacatatgatctatgtctctttcattctagaatcgaatca 39808204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 418
Target Start/End: Original strand, 16576264 - 16576367
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattatta 414  Q
    ||||||||||| || ||| || ||||||||| ||||| ||||||||| |||||||||||||| |||| ||| ||||| |||||||||||| |||| ||||    
T  16576264 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcatta 16576363  T
Q  415 gggg 418  Q
    ||||    
T  16576364 gggg 16576367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 379
Target Start/End: Complemental strand, 2249025 - 2248931
Alignment:
Q  285 tattttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatc 379  Q
    |||||||||||||| |||| | | |||||||||||||||||||| |||||| || |||||| ||||| | ||| ||| |||||||| ||||||||    
T  2249025 tattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatcttcttaattgaacatgtggtctccatc 2248931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 416
Target Start/End: Complemental strand, 38577025 - 38576895
Alignment:
Q  286 attttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttc 385  Q
    ||||||||||| | |||||| | ||| ||||||||||||||||  || || || ||| || ||||| || |||||| |||||||||| |||||||| |||    
T  38577025 attttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttc 38576926  T
Q  386 attccataatcgaatcatatttattattagg 416  Q
     | |||||||| |||||||||| | ||||||    
T  38576925 gtaccataatcaaatcatatttgtcattagg 38576895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 34176742 - 34176821
Alignment:
Q  337 atcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattagg 416  Q
    |||||| || ||||| ||||||||||||||| |||||| |||||| ||| || |||||||||||||||||| | ||||||    
T  34176742 atcaaaattcttcatctccttcatttaacatatgatcttcatctctttcgtttcataatcgaatcatatttttcattagg 34176821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 437
Target Start/End: Original strand, 28282667 - 28282788
Alignment:
Q  316 taccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattag 415  Q
    ||||||||||||| | | || ||||||||| || || | ||||||| || |||||||||||||||| ||| |||||||||| |||  || || |||||||    
T  28282667 taccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattag 28282766  T
Q  416 gggcaatttatcctcaattcat 437  Q
    ||| || ||| | |||||||||    
T  28282767 gggtaaattaccgtcaattcat 28282788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 13712979 - 13712912
Alignment:
Q  314 gttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctc 381  Q
    ||||||||||| |||  |||||| |||||||| || || |||||||||||||||||||||| ||||||    
T  13712979 gttaccatttttatcttaaaaatttcaaacttttttatctccttcatttaacatgtgatctacatctc 13712912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 35371127 - 35371196
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctcctt 384  Q
    |||||||||||||  ||| || ||||||||| ||  || ||||||||||||||||||| |||||||||||    
T  35371127 ttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctcctt 35371196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 38576796 - 38576747
Alignment:
Q  355 cttcatttaacatgtgatctccatctccttcattccataatcgaatcata 404  Q
    ||||||| |||||||| ||||||| |||||||||||| ||||||||||||    
T  38576796 cttcattcaacatgtgttctccatatccttcattccaaaatcgaatcata 38576747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 16576437 - 16576525
Alignment:
Q  319 cattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatattt 407  Q
    |||||||||  |||||| | ||||| | ||||| ||||||||||||||||  |||||||||| |||| || ||| || |||||||||||    
T  16576437 cattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgcaatctccatcttcttcgttacattattgaatcatattt 16576525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 34176629 - 34176705
Alignment:
Q  285 tattttcttcatctatattttaaaaattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatt 361  Q
    |||||||||||||| |||||  | ||| ||||||||||||||||  || |||||||||||| ||||| | |||||||    
T  34176629 tattttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatcttcttcatt 34176705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 437
Target Start/End: Original strand, 35370412 - 35370535
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattat 412  Q
    |||||||||||| ||| ||| |||| ||||||| ||| | ||||||||| ||||||| ||  ||||||| || ||||||  |||||| |||| || | ||    
T  35370412 agttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgtaatacccatctcatttattcca-gatcgaaacatacttgtcat 35370510  T
Q  413 taggggcaatttatcctcaattcat 437  Q
    |||| |||| ||| |||||||||||    
T  35370511 taggagcaaattaccctcaattcat 35370535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 9050186 - 9050096
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcat 403  Q
    |||||||||||||||   || || | ||||||| ||||| ||| ||||| ||||| ||||||||||||| ||| || || |||||||||||    
T  9050186 agttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatcat 9050096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 25606423 - 25606504
Alignment:
Q  356 ttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattaggggcaatttatcctcaattcat 437  Q
    |||||| ||||| |||| | |||||||||| |||||||| |||||| || || |||||| ||| || ||| |||||||||||    
T  25606423 ttcattcaacatatgatatacatctccttcgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcat 25606504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 437
Target Start/End: Complemental strand, 9050356 - 9050232
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattat 412  Q
    |||| |||||||||||  ||||||||||| | | ||||| || |||||||||||| |||| | ||||| |||  || |||||||||||| || |  | ||    
T  9050356 agttgccattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcataatcgaatcctactagtcat 9050257  T
Q  413 taggggcaatttatcctcaattcat 437  Q
    ||| || || ||| |||||||||||    
T  9050256 tagaggtaaattaccctcaattcat 9050232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 16863470 - 16863542
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttc 385  Q
    |||||||||||||||| ||| || |||||| || ||||| | ||| ||| || ||||||||| ||||||||||    
T  16863470 agttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttc 16863542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 40374128 - 40374076
Alignment:
Q  355 cttcatttaacatgtgatctccatctccttcattccataatcgaatcatattt 407  Q
    ||||||| ||||| | ||||||||||  ||||||||||||| |||||||||||    
T  40374128 cttcattcaacatattatctccatcttgttcattccataattgaatcatattt 40374076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 437
Target Start/End: Original strand, 32047190 - 32047312
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattatta 414  Q
    |||||||||||||| ||| || ||||||||| ||||| || |||||| ||||| |||| | | ||| |||||||||||||| ||||| || |||| ||||    
T  32047190 ttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcatta 32047289  T
Q  415 ggggcaatttatcctcaattcat 437  Q
    | || || |||||||||||||||    
T  32047290 gaggtaaattatcctcaattcat 32047312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 414
Target Start/End: Original strand, 32342620 - 32342715
Alignment:
Q  319 cattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattatta 414  Q
    |||||||||| |||||| ||||||||| ||||| || |||||| |||||| |||||| || |  ||| ||||| |||| |||||||||||| ||||    
T  32342620 cattttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatcatatttatcatta 32342715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 26236692 - 26236615
Alignment:
Q  338 tcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattattag 415  Q
    |||||||||||||  | ||||||||||||||||||||  ||||  ||||||| | ||| ||||||||||||| |||||    
T  26236692 tcaaacttattcaaatacttcatttaacatgtgatctgtatctttttcattctaaaattgaatcatatttatcattag 26236615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 415
Target Start/End: Original strand, 39341213 - 39341315
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattat 412  Q
    ||||||||||||||||  || |||||||||||| ||||| ||||||||| |||||| ||||||||| | |||| ||| | ||| ||||| ||||||| ||    
T  39341213 agttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttatcat 39341312  T
Q  413 tag 415  Q
    |||    
T  39341313 tag 39341315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 443
Target Start/End: Original strand, 54028619 - 54028693
Alignment:
Q  369 tgatctccatctccttcattccataatcgaatcatatttattattaggggcaatttatcctcaattcattaaatg 443  Q
    |||||||||||||||||||| |||||| ||||||||||||| |||||||  || ||| ||||||||||| |||||    
T  54028619 tgatctccatctccttcatttcataattgaatcatatttatcattagggataaattaccctcaattcatgaaatg 54028693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 42091856 - 42091767
Alignment:
Q  309 aattagttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcga 398  Q
    ||||| ||| |||||||||| |||||| ||||||||| ||||| || ||||||||||||||||| || || || |||| |||| ||||||    
T  42091856 aattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcga 42091767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 415
Target Start/End: Original strand, 54437820 - 54437922
Alignment:
Q  313 agttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatatttattat 412  Q
    |||||||||||| ||| |||||| ||||||||| ||||| | | |||||||||| ||| | |||||||  ||||||  | |||| |||||||||||| ||    
T  54437820 agttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaacacgtggtttccatctttttcattttaaaatcaaatcatatttatcat 54437919  T
Q  413 tag 415  Q
    |||    
T  54437920 tag 54437922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 20519507 - 20519431
Alignment:
Q  331 aaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattccataatcgaatcatattt 407  Q
    ||||| ||||||||| ||||||| ||||||| ||| |||||| |||||||  ||| ||||| ||| |||||||||||    
T  20519507 aaaaacatcaaactttttcattttcttcattcaacgtgtgatatccatctttttcgttccaaaattgaatcatattt 20519431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 54437653 - 54437729
Alignment:
Q  315 ttaccattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctccttcattcca 391  Q
    |||||||||||||| ||| || || |||||| ||||| ||||||||||||||||| | || |||||| ||| |||||    
T  54437653 ttaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctctttcgttcca 54437729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 20519353 - 20519286
Alignment:
Q  317 accattttcatcgcaaaaatatcaaacttattcatttccttcatttaacatgtgatctccatctcctt 384  Q
    |||||||||||| ||| ||  ||||| || ||||| || |||||| ||||||||||||||||||||||    
T  20519353 accattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctt 20519286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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