View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18705_high_4 (Length: 474)
Name: NF18705_high_4
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Original strand, 44023889 - 44024336
Alignment:
| Q |
10 |
aagaatattatctagttatggaaaccacaagaatcattggttacacctctaaaactaaggtgcaactccactttatatagccaccaaccagggtgagagg |
109 |
Q |
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| T |
44023889 |
aagaaaattatctagttatggaaaccacaagaatcattggttacacctctaaaactaaggtgcaactccactttatatagccaccaaccagggtgagagg |
44023988 |
T |
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| Q |
110 |
gagaatgacctgaaatcaatcaattccaaatggtactactacatgttccaaacgcaaatctgaaaccgaacagattgtttgtccatgtcaccagaggcag |
209 |
Q |
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| T |
44023989 |
gagaatgacctgaaatcaatcaattccaaatggtaatactacatgttccaaacgcaaatctgaaaccgaacagattgtttgtccatgtcaccagaggcag |
44024088 |
T |
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| Q |
210 |
gagggaagatctcgtgtcagtgtcagataaattcaggcttcacgagcccaatccattattgcagctcatatttcacgtgtagcaaaatcatctgcttgag |
309 |
Q |
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| T |
44024089 |
gagggaagatctcgtgtcagtgtcagataaattcaggcttcacgagcccaatccattattgcagctcatatttcacgtgtagcaaaatcatctgcttgag |
44024188 |
T |
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| Q |
310 |
caggactcgaaaactgcttaatcaagcaacaatatgagccagctgatattgttttcaccatatctggaatttcgaaccatccacaatccacacacagtaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44024189 |
caggactcgaaaactgcttaatcaagcaacaatatgagccagctgatattgttttcaccatatctggaatttcgaaccatccacaatccacacacagtaa |
44024288 |
T |
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| Q |
410 |
atcagcaaggtcaacaccaggatgaagtgccattgttctgcaactcag |
457 |
Q |
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| T |
44024289 |
atcagcaaggtcaacaccaggatgaagtgccattgttctgcaactcag |
44024336 |
T |
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