View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18705_high_5 (Length: 464)
Name: NF18705_high_5
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 10 - 416
Target Start/End: Complemental strand, 32169650 - 32169239
Alignment:
| Q |
10 |
attatactacaggaataatgtttgaaaatgatttaattaaaactccaacaaccattgaccagtccagtcggtgttatttgtattgttgttcagttataat |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
32169650 |
attatactacagcaataatgtttgaaaatgatttaattaaaactccaacaaccattgaccagtccagtcggtgttatatgtattgttgttcacttataat |
32169551 |
T |
|
| Q |
110 |
aaagttgggtcttgacaacgagtgtctcataagactctttaaagattctaaattaagaaactt---tttatnnnnnnnnnnnnnnnttttaatttttaat |
206 |
Q |
| |
|
||| || |||||||| |||||||||||||||| |||||||| ||||||||| ||||||| ||||| |||||||||| ||| |
|
|
| T |
32169550 |
aaa-ttaggtcttgataacgagtgtctcataatactcttta--gattctaaaataagaaaaaaaaatttataaaaaaagtcaaaaattttaattttcaat |
32169454 |
T |
|
| Q |
207 |
atactttacacaaacttttatacaatgttacca------gtcttggaggcggctgagctgtgtatagtacata--ctcactccatagggacatcgaccag |
298 |
Q |
| |
|
| |||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
32169453 |
acactttacataaacttttatacaatgttatcatttaaagtcttggaggcggctgagctgtgtatagtacatatgctcattccatagggacatcgaccag |
32169354 |
T |
|
| Q |
299 |
tttcatcagcaagacctgttactgttagaatatcttcttcaatggcaaagaaacctgtgaaatactacgtggtatgtagtttgtttatttatttatttca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32169353 |
tttcatcagcaagacctgttactgttagaatatcttc---aatggcaaagaaacctgtgaaatactacgtggtatgtagtttgtttatttatttatttca |
32169257 |
T |
|
| Q |
399 |
ttgagtaattttataact |
416 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
32169256 |
ttgagtaatgttataact |
32169239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 27325411 - 27325371
Alignment:
| Q |
336 |
ttcaatggcaaagaaacctgtgaaatactacgtggtatgta |
376 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27325411 |
ttcaatggcaaagaaacctgtcaagtactacgtggtatgta |
27325371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 32165519 - 32165483
Alignment:
| Q |
339 |
aatggcaaagaaacctgtgaaatactacgtggtatgt |
375 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
32165519 |
aatggcaaagaaacatgtcaaatactacgtggtatgt |
32165483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 32169208 - 32169176
Alignment:
| Q |
418 |
tgttgtgtgaatcttagtgatgaggtacatact |
450 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
32169208 |
tgttgtgtgaatctgagtgatgaggtacatact |
32169176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University