View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18705_high_6 (Length: 454)
Name: NF18705_high_6
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 182 - 436
Target Start/End: Original strand, 27729937 - 27730186
Alignment:
| Q |
182 |
tccaatccatagtttaacaaaactaaaaatgtgtaaattcaattatgtcaatcctatccatgatttgttacatttgatagttaagttaatccaactcatg |
281 |
Q |
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| T |
27729937 |
tccaatccatagtttaacaaaactaaaaatgtgtaaattcaattatgtcaatcctatccatgatttgttacatttgatagttaagttaatccaactcatg |
27730036 |
T |
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| Q |
282 |
atttgatgaattcagtcatgttcattcaaaaaacaaaatgaacaaattaagttacgtgtactagttcgagcgacattgccatatgctagtcgccaaattt |
381 |
Q |
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| T |
27730037 |
atttgatgaattcagttatgttaatt----aaaaaaaatgaacaaatt-agtaacatgtactagttcgagcgacattgccatatgctagtcgccaaattt |
27730131 |
T |
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| Q |
382 |
atgactatacttcaacctatattatgactacattagtcgataaaatgaattaatt |
436 |
Q |
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| T |
27730132 |
atgactatacttaaacctatattatgactacattagtggataaaatgaattaatt |
27730186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 27729806 - 27729835
Alignment:
| Q |
1 |
aaaaaggaaagacaaaaatactcttaattc |
30 |
Q |
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| T |
27729806 |
aaaaaggaaagacaaaaatactcttaattc |
27729835 |
T |
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