View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18705_low_10 (Length: 380)

Name: NF18705_low_10
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18705_low_10
NF18705_low_10
[»] chr1 (5 HSPs)
chr1 (3-362)||(4367385-4367744)
chr1 (12-108)||(4017592-4017688)
chr1 (12-108)||(10218126-10218222)
chr1 (12-79)||(4015774-4015841)
chr1 (12-78)||(21897356-21897422)
[»] chr7 (9 HSPs)
chr7 (12-144)||(29105856-29105988)
chr7 (12-110)||(29480368-29480466)
chr7 (3-90)||(29922925-29923012)
chr7 (12-143)||(29074123-29074253)
chr7 (12-66)||(47479667-47479721)
chr7 (13-106)||(29436502-29436595)
chr7 (12-93)||(29446534-29446615)
chr7 (13-90)||(29454982-29455059)
chr7 (13-110)||(29477246-29477343)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 4367385 - 4367744
Alignment:
Q  3 agatgaggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367385 agatgaggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggac 4367484  T
Q  103 caccggcgataaagccatagacgtagctgattggatattcatctcaaagcagcggtgttgtggttgaaacctaaaaacaaggctatattgtatattgctg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367485 caccggcgataaagccatagacgtagctgattggatattcatctcaaagtagcggtgttgtggttgaaacctaaaaacaaggctatattgtatattgctg 4367584  T
Q  203 ttgcaaatgtgttgtgggaaatgaagttatatcatgtgtgactttcatatgcaagtacaaagtgcaaaactagtattgcacaataacttccatttcagtt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367585 ttgcaaatgtgttgtgggaaatgaagttatatcatgtgtgactttcatatgcaagtacaaagtgcaaaactagtattgcacaataacttccatttcagtt 4367684  T
Q  303 tccatcccatataaaattataggacaagcttacaaatcaaggcctttaaagaggtacatt 362  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4367685 tccatcccatataaaactataggacaagcttacaaatcaaggcctttaaagaggtacatt 4367744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 4017592 - 4017688
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccgg 108  Q
    |||||||||| ||||| |||||||| ||| | |||||| |||| ||||| |||||||||||||||||  | |||||||| || ||||||||| ||||    
T  4017592 ttttccaagatttactcacacacctaaattggagaagagatttcacgggaagaaacgaaagtacctcgacgatgagatcctcggagaggaccgccgg 4017688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 10218222 - 10218126
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccgg 108  Q
    |||||||||| ||||| ||||||||||| | || |||| |||| || || ||||| ||||||||||| |||| |||||| || ||||||||| ||||    
T  10218222 ttttccaagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagtacctcggcaacgagatcttcggagaggaccgccgg 10218126  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 4015774 - 4015841
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctca 79  Q
    |||||||||||||||| |||||||||||||||| |||| || | || || ||||| ||||||||||||    
T  4015774 ttttccaagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagtacctca 4015841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 21897356 - 21897422
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctc 78  Q
    |||||||| ||||||| ||| |||||||||||| |||| || |||| || |||||||||||||||||    
T  21897356 ttttccaacacttacttacagacctgaatcgaataagagatctaacaggaagaaacgaaagtacctc 21897422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 29105988 - 29105856
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcga 111  Q
    ||||||||||||| |||||| |||| |||||||||||| || ||||||| || || ||||| || || || ||||||||||| | ||| ||||||| |||    
T  29105988 ttttccaagacttgctgacagacctaaatcgaagaagaaatataacgggaaggaaggaaagaacttctgcgatgagatcatcggggagaaccaccgacga 29105889  T
Q  112 taaagccatagacgtagctgattggatattcat 144  Q
     | |||||||||| | || ||||| ||||||||    
T  29105888 cagagccatagactttgccgattgtatattcat 29105856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 29480368 - 29480466
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcg 110  Q
    ||||||||||||||| ||||||| ||||||||| | || |||| ||||| || || ||||||| ||| |  |||||||||||||  |||||||||||||    
T  29480368 ttttccaagacttacagacacacttgaatcgaacaggagatttgacgggaaggaaggaaagtaactctgtgatgagatcatcaggaaggaccaccggcg 29480466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 29922925 - 29923012
Alignment:
Q  3 agatgaggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatc 90  Q
    |||||||  |||||||||||||||| |||| | ||||||||||||||  ||| || || ||||| |||||||| ||||| ||||||||    
T  29922925 agatgagtattttccaagacttactaacactcttgaatcgaagaagaggtttcaccggaagaaaggaaagtacttcagcgatgagatc 29923012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 29074253 - 29074123
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcga 111  Q
    ||||||||||||| |||||| |||| |||||||||||| || ||| ||| || || ||||| || || || ||||||||||| |  || ||||||| |||    
T  29074253 ttttccaagacttgctgacagacctaaatcgaagaagaaatataa-gggaaggaaggaaagaacttctgcgatgagatcatcgggaagaaccaccgacga 29074155  T
Q  112 taaagccatagacgtagctgattggatattca 143  Q
     | |||||||||| | || ||||| |||||||    
T  29074154 cagagccatagactttgccgattgtatattca 29074123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 47479667 - 47479721
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaa 66  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| |||||| |||||    
T  47479667 ttttccaagacttacttacacaactgaatcgaataagaaattcaacgggaagaaa 47479721  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 29436502 - 29436595
Alignment:
Q  13 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccacc 106  Q
    ||||||||||| ||||||||| || ||| ||||||   |||||||||| ||||||| ||||| ||| |  |||||||| |||| ||| ||||||    
T  29436502 tttccaagactcactgacacatctaaattgaagaatggatttaacgggaagaaacggaagtatctcggtgatgagatcgtcagggagaaccacc 29436595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 29446534 - 29446615
Alignment:
Q  12 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatc 93  Q
    |||||||| ||||| |||||||| ||||||||| |||| |||| ||||| || || ||||  ||||| || |||||||||||    
T  29446534 ttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaaaaacctcggcgatgagatcatc 29446615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 29454982 - 29455059
Alignment:
Q  13 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatc 90  Q
    ||||||| ||||| | || ||||||||| ||||||||  ||| ||||| ||| | |||||||||||||| ||||||||    
T  29454982 tttccaatacttattcacgcacctgaattgaagaagaattttgacgggaagataagaaagtacctcagcgatgagatc 29455059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 29477246 - 29477343
Alignment:
Q  13 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcg 110  Q
    |||||||||||| || |||||  ||| ||||| |||| |||| ||||| || || ||||||| ||| || |||||||| ||||  |||||||||||||    
T  29477246 tttccaagacttgctaacacatttgagtcgaacaagagatttgacgggaaggaaggaaagtaactctgcgatgagatcgtcaggaaggaccaccggcg 29477343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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