View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18705_low_12 (Length: 303)
Name: NF18705_low_12
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_low_12 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 51441805 - 51441533
Alignment:
| Q |
13 |
aatatttgctgcctattatttattcagatctatctttaagatcattgcagaggatccgggccgaaactgccattggctgaatttaagaaaggaaaagtat |
112 |
Q |
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| T |
51441805 |
aatatttgctgcctattatttattcagatctatctttaagatcattgcagaggatccgggccgaaactgccattggctgaatttaaggaaggaaaagtat |
51441706 |
T |
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| Q |
113 |
tttttaccttgtgcatttttatactccaggtttgcccccgaatccatgagaatgaaaactatatcagtttgattgaaaactgcagcctacacagaatatt |
212 |
Q |
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| T |
51441705 |
tttttaccttgtgcatttttatactccaggtttgcccccgaatccatgagaatgaaaactatatcagtttgattgaaaactgcagcctacacagaatatt |
51441606 |
T |
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| Q |
213 |
aaaattagtgtctatccactatatgattaagaaaactatatcatcctgagcacaaacatgctgaagagtgaga |
285 |
Q |
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| T |
51441605 |
aaaattagtgtcaatccactatatgattaagaaaactatatcatcctgagcacaaacatgctgaagagtgaga |
51441533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 11910232 - 11910043
Alignment:
| Q |
13 |
aatatttgctgcctattatttattcagatctatctttaagatcattgcagaggatccgggccgaaactgccattggctgaatttaagaaaggaaaagtat |
112 |
Q |
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| T |
11910232 |
aatatttgctgtcaattatt-attcagatatatctttaagatcattgcagaggatccgggctgaaatggccatttgctgaatttaaggaaggaaaagtat |
11910134 |
T |
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| Q |
113 |
tttttaccttgtgcatttttatactccaggtttgcccccgaatccatgagaatgaaaactatatcagtttgattgaaaactgcagcctaca |
203 |
Q |
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| T |
11910133 |
ttattaccttgtgcatttttatactccagattttcccccgaatccacaagaatgaaaactatatcggtttgattgaaaactgtcgcctaca |
11910043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 4888417 - 4888481
Alignment:
| Q |
13 |
aatatttgctgcctattatttattcagatctatctttaagatcattgcagaggatccgggccgaaa |
78 |
Q |
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| T |
4888417 |
aatatttgctgtcaattatt-attcagatatgtctttaagatcattgcagaggatccgggctgaaa |
4888481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 35045694 - 35045423
Alignment:
| Q |
13 |
aatatttgctgcctattatttattcagatctatctttaagatcattgcagaggatccgggccgaaactgccattggctgaatttaagaaaggaaaagtat |
112 |
Q |
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||||||||||| | |||||| |||||||| | ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |
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| T |
35045694 |
aatatttgctgtcaattatt-attcagatatgtctttaagatcattgcagaggatccgggctgaaatgaccatttactgaatttaagaaaggaaaagtac |
35045596 |
T |
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| Q |
113 |
tttttaccttgtgcatttttatactccaggtttgcccccgaatccatgagaatgaaaactatatcagtttgattgaaaactgcagcctacacagaatatt |
212 |
Q |
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|| ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||| |
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| T |
35045595 |
ttattaccttgtccatttttatactccagattttcccccgaatccatgagaatgaaaactatatcggtttgattgaaaactgccgcctacagagagtatt |
35045496 |
T |
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| Q |
213 |
aaaattagtgtctatccactatatgattaagaaaactatatcatcctgagcacaaacatgctgaagagtgaga |
285 |
Q |
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| T |
35045495 |
ataattagtgtatatccactatatgattaagaaaattatatcaacccgagcacaaagatgccgaagagtgaga |
35045423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 32 - 285
Target Start/End: Complemental strand, 41381123 - 41380870
Alignment:
| Q |
32 |
ttattcagatctatctttaagatcattgcagaggatccgggccgaaactgccattggctgaatttaagaaaggaaaagtattttttaccttgtgcatttt |
131 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
41381123 |
ttattcagatatgtctttaagatcattgcagaggatccgggctgaaatgaccatttactgaatttaagaaaggaaaaatatttattaccttgtgcatttt |
41381024 |
T |
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| Q |
132 |
tatactccaggtttgcccccgaatccatgagaatgaaaactatatcagtttgattgaaaactgcagcctacacagaatattaaaattagtgtctatccac |
231 |
Q |
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| T |
41381023 |
tatactccagattttcccccgaatccatgagaatgaaaactatatcggtttgattgaaaactgccgcctacagagagtattataattagtatatatccac |
41380924 |
T |
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| Q |
232 |
tatatgattaagaaaactatatcatcctgagcacaaacatgctgaagagtgaga |
285 |
Q |
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| T |
41380923 |
tatatgattaagaaaattatatcaacccgagcacaaagatgccgaagagtgaga |
41380870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 59 - 285
Target Start/End: Complemental strand, 15671 - 15445
Alignment:
| Q |
59 |
gcagaggatccgggccgaaactgccattggctgaatttaagaaaggaaaagtattttttaccttgtgcatttttatactccaggtttgcccccgaatcca |
158 |
Q |
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| T |
15671 |
gcagaggatccgggctgaaatgaccatttgctgaatttaagaaaggaaaagtatttattatcttgtccatttttatactccagattttcccccgaatcca |
15572 |
T |
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| Q |
159 |
tgagaatgaaaactatatcagtttgattgaaaactgcagcctacacagaatattaaaattagtgtctatccactatatgattaagaaaactatatcatcc |
258 |
Q |
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| T |
15571 |
tgagaatgaaaactaaatcggtttgattaaaaactgccgcctacagagagtattataattagtgtatatccactatatgatcaagaaaattatatcaacc |
15472 |
T |
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| Q |
259 |
tgagcacaaacatgctgaagagtgaga |
285 |
Q |
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| T |
15471 |
cgagcacaaagatgccgaagaatgaga |
15445 |
T |
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