View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18705_low_14 (Length: 297)

Name: NF18705_low_14
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18705_low_14
NF18705_low_14
[»] chr1 (1 HSPs)
chr1 (1-297)||(48536818-48537101)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 48536818 - 48537101
Alignment:
Q  1 aataagaagaaagcaaatcacagacaattgacaactacacatcaagactacacatcaaggaaccaatgtttccaatacaaaaacaagctcaattgaattt 100  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48536818 aataagaagaaagcaaatcacagacaattgacaacta-------------cacatcaaggaaccaatgtttccaatacaaaaataagctcaattgaattt 48536904  T
Q  101 cagggaaagtacgatgctttcaaacactgtattggacaaatagacttagagtaacaaacttttaattgcaaataaataaatatgttgagggtatgaaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48536905 cagggaaagtacgatgctttcaaacactgtattggacaaatagacttagagtaacaaacttttaattgcaaataaataaatatgttgagggtatgaaaag 48537004  T
Q  201 gtgaaaagggaaagttcataccatcccgtttatgctccgtcgtagaacggtaaagcaaagaagtaaagaagagagtattagccataaaatcagacat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48537005 gtgaaaagggaaagttcataccatcccgtttatgctccgtcgtagaacggtaaagcaaagaagtaaagaagagtgtattagccataaaatcagacat 48537101  T

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