View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18705_low_15 (Length: 250)
Name: NF18705_low_15
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48537076 - 48537316
Alignment:
| Q |
1 |
agtgtattagccataaaatcagacatgtgatcagccaacaaaggatactcaacaccagcaatcaacccttttctgagaattatatgtggtggctccaaat |
100 |
Q |
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| T |
48537076 |
agtgtattagccataaaatcagacatgtgatcagccaacaaaggatactcaacaccagcaatcaacccttttctgagaattatatgtggtggctccaaat |
48537175 |
T |
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| Q |
101 |
aacgcataccaatcaaggacatagtacgatcaaaatgatacacttcaggaacatgatcaggactcaatttaccctcttctttcaatgccaatgactcaaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48537176 |
aacgcataccaatcaaagacatagtacgatcaaaatgatacacttcaggaacatgatcaggactcaatttaccctcttctttcaatgccaatgactcaaa |
48537275 |
T |
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| Q |
201 |
ataggctctttctttcgtcattggccatgattctcctatgc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
48537276 |
ataggctctttctttcgtcattggccatgattctcctatgc |
48537316 |
T |
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