View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18705_low_16 (Length: 248)
Name: NF18705_low_16
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 6022928 - 6023142
Alignment:
| Q |
20 |
cactgttatcattcatgtgttcaacaaatcaccctataatcttactcttcattggtaacatatttctctccttaccttcaataacaatattagagaaata |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6022928 |
cactgttatcattcatgtattcaacaaatcaccctataatcttactcttcattggtaacatatttctctccttaccttcaataacaatattagagaaata |
6023027 |
T |
|
| Q |
120 |
tattaagcaagcacaccatggtttgaattcaagaactaatattattgactagtccacctgttaaatgtttcttatatttttatattttattacacatcca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6023028 |
tattaagcaagcacaccatggtttgaattcaagaactaatattattgactagtcctcctgttaaacgtttcttatatttttatattttattacacatcca |
6023127 |
T |
|
| Q |
220 |
tgcatgtagtataat |
234 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6023128 |
tgcatgtagtataat |
6023142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University