View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18705_low_18 (Length: 238)
Name: NF18705_low_18
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 39055821 - 39056018
Alignment:
| Q |
36 |
ttaattgaattggtgttcaataattttgtaggaaaacaacttgggagcatttgattttgtttttgtggatgctgataaggataattacttaaactatcat |
135 |
Q |
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| T |
39055821 |
ttaattgaattggtgtccattaattttgcaggaaaataacaagggggcatttgattttgtttttgtggatgctgataaggataattacttaaactatcat |
39055920 |
T |
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| Q |
136 |
gagaggataattgatcttgttaaagttggaggattgattggatatgataatactttatggtttggatcagttgctgttccagatgatgctcctatgct |
233 |
Q |
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| T |
39055921 |
gagaggataattgatcttgttaaagttggaggattgattggatatgataatactttatggtttggatcagttgctgttccagatgatgctcctatgct |
39056018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 39049763 - 39049939
Alignment:
| Q |
56 |
taattttgtaggaaaacaacttgggagcatttgattttgtttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgt |
155 |
Q |
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| T |
39049763 |
taattttgtaggaaaataacaagggggcatttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgt |
39049862 |
T |
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| Q |
156 |
taaagttggaggattgattggatatgataatactttatggtttggatcagttgctgttccagatgatgctcctatgc |
232 |
Q |
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| T |
39049863 |
gaaagttggaggattgattggatatgataataccttatgggttggatcagtggcagctccagatgatgcacctatgc |
39049939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 231
Target Start/End: Original strand, 39238099 - 39238294
Alignment:
| Q |
36 |
ttaattgaattggtgttcaataattttgtaggaaaacaacttgggagcatttgattttgtttttgtggatgctgataaggataattacttaaactatcat |
135 |
Q |
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| T |
39238099 |
ttaattgaattggtgtccatcaattttgcaggaaaataacaaagggacgtttgactttgtttttgtggatgctgataagaataactacttaaactatcac |
39238198 |
T |
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| Q |
136 |
gagaggataattgatcttgttaaagttggaggattgattggatatgataatactttatggtttggatcagttgctgttccagatgatgctcctatg |
231 |
Q |
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| T |
39238199 |
gtgaggatgattgatcttgttaaggttgggggattaatcggttacgataacaccttatggagtggatcagtggcagctccacctgatgcacctatg |
39238294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 39291264 - 39291131
Alignment:
| Q |
83 |
catttgattttgtttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgttaaagttggaggattgattggatatga |
182 |
Q |
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| T |
39291264 |
catttgatttcgtttatgtggatgctgataaggataactacattaactatcacaagagggtggttgagcttgttaaagttggaggattggttgcatatga |
39291165 |
T |
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| Q |
183 |
taatactttatggtttggatcagttgctgttcca |
216 |
Q |
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| T |
39291164 |
caacaccttatggagtggttctgttgcggttcca |
39291131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 33453517 - 33453445
Alignment:
| Q |
95 |
tttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgttaaagttggagg |
167 |
Q |
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| T |
33453517 |
tttttgtggatgctgacaaagacaattacctcaactaccataagaggttaattgatcttgttaaagtgggagg |
33453445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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