View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18705_low_19 (Length: 228)
Name: NF18705_low_19
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 49755406 - 49755592
Alignment:
| Q |
18 |
ataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatgtttcatttcaagttcttgaggttacaccaggaacctcttc |
117 |
Q |
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| T |
49755406 |
ataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatgtttcatttcaagttcttgaggttacaccaggaacctcttc |
49755505 |
T |
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| Q |
118 |
tgtgtgtcactttttcccagcggataattacatctgggtccctaaattgaaatcacaaggttcttctaggatgtgatttcaagctat |
204 |
Q |
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| T |
49755506 |
tgtgtgtcactttttcccagcggataattacatctgggtccctaaattgaaatcacaaggttcttctaggatgtgatttcaagctat |
49755592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 54448868 - 54448689
Alignment:
| Q |
18 |
ataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatgtttcatttcaagttcttgaggttacaccaggaacctcttc |
117 |
Q |
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| T |
54448868 |
ataaggttgaggccatggtggtttgtcacttagatacatcacaatgggcacctagtcatgtttcatttcaagttcttggtgttacaccaggaagctcttc |
54448769 |
T |
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| Q |
118 |
tgtgtgtcactttttcccagcggataattacatctgggtccctaaattgaaatcacaaggttcttctaggatgtgatttc |
197 |
Q |
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| T |
54448768 |
tgtgtgtcattttttcccagcggacaattacatttgggtccctaaagtgaaatcacaaggttcttctagcatgtgatttc |
54448689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 26208680 - 26208824
Alignment:
| Q |
22 |
ggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatgtttcatttcaagttcttgaggttacaccaggaacctcttctgtg |
121 |
Q |
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| T |
26208680 |
ggtggaagctatggttgtttgtcatatggatacttctcattggggacatggtcatgtttcatttcaggttcttggtgttgtgccaggaagttctaatgtc |
26208779 |
T |
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| Q |
122 |
tgtcactttttcccagcggataattacatctgggtccctaaattg |
166 |
Q |
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| T |
26208780 |
tgtcacttttttcctgctgataatttcatatgggttccaaaattg |
26208824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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