View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18705_low_2 (Length: 740)
Name: NF18705_low_2
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 1 - 722
Target Start/End: Original strand, 3120751 - 3121472
Alignment:
| Q |
1 |
atcgacgagcctgacttattgcatcaaagatatcatgccaacaatttccactctcataaataacatcatgatcacacccatcaaccctcaaaccaggaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3120751 |
atcgacgagcctgacttattgcatcaaagatatcttgccaacaatttccactctcataaataacatcatgatcaccaccatcaaccctcaaaccaggaag |
3120850 |
T |
|
| Q |
101 |
acaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataatcagaaccaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3120851 |
acaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataatcagaaccaaca |
3120950 |
T |
|
| Q |
201 |
ccattgctataaagcgttatcttatcaataggagtatactgaattgataagctcaaaacggtttcggtcttgaagggttttccattagtattaagaatgg |
300 |
Q |
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| T |
3120951 |
ccattgctataaagcgttatcttatcaataggagtatactgaattgataagctcaaaacggtttcggtcttgaagggttttccattagtattaagaatgg |
3121050 |
T |
|
| Q |
301 |
ggaaaaagccttcaacttttgcaccatcacataacttttcaactggaattccaactgcaccaataagctgtgaaccaacaatatcactgtcttttacaac |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3121051 |
ggaaaaagccttcaacttttgcaccatcacataacttttcaactggaattccaactgcaccaataagctgtgaaccaacaatatcactgtcttttacaac |
3121150 |
T |
|
| Q |
401 |
aaagtgaatctctgatgcttggtgtgcaacaggtacattaaaatgttgcatccaaacagggttctcatcatttctgatcacagaagttcttgcaatcaca |
500 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3121151 |
aaagtgaatctctgatgcttgatgtgcaacaggtacattaaaatgttgcatccaaacagggttctcatcatttctgatcacagaagttctagcaatcaca |
3121250 |
T |
|
| Q |
501 |
gcaccagccacagaaactgtgacatatggatcactggtttggttcattttgttaccaagtttcttaggtaggattgaaagcattgcccccaagttcttgt |
600 |
Q |
| |
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| T |
3121251 |
gcaccagccacagaaactgtgacatatggatcactggtttggttcattttgttaccaagtttcttaggtaggattgaaagcattgcccccaagttcttgt |
3121350 |
T |
|
| Q |
601 |
gaaaagtgtccatgttaggaaggtttttggcctcttggatgcaaatttctaagttgccatgtaagagaaggatccttaaggaagttgaagtggttggaaa |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3121351 |
gaaaagtgtccatgttaggaaggtttttggcctcttggatgcaaatttctaagttgccatgtaagagaaggatccttaaggaagttgaagtggttggaaa |
3121450 |
T |
|
| Q |
701 |
tggaacaagttgttgaccttgt |
722 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3121451 |
tggaacaagttgttgaccttgt |
3121472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 722
Target Start/End: Original strand, 3114903 - 3115634
Alignment:
| Q |
9 |
gcctgacttattgcatcaaagatatcatgccaacaatttccactctcataaataacatcatgatcacacccatcaaccctcaaaccaggaagacaacctt |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
3114903 |
gcctgacttattgcatcaaagatatcatgccaacaatttccactctcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaacctt |
3115002 |
T |
|
| Q |
109 |
gtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataatcagaaccaacaccattgct |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||| |
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| T |
3115003 |
gtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaacaccattgct |
3115102 |
T |
|
| Q |
209 |
ataaagcgttatcttatcaataggagtatactgaattgataagctcaaaacggtttcggtcttgaagggttttccattagtattaagaatggggaaaaag |
308 |
Q |
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|||||| | || |||||||| ||| |||||||||||||| |||||||||| | ||| ||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
3115103 |
ataaagggctaccttatcaacaggtgtatactgaattgacaagctcaaaattgcttcagtcttaaagggttttccattagtattgagaatgggaaaaaag |
3115202 |
T |
|
| Q |
309 |
ccttcaacttttgcaccatcacataacttttcaactggaattccaactgcaccaataagctgtgaaccaacaatatcactgtcttttacaacaaagtgaa |
408 |
Q |
| |
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||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3115203 |
ccttcaacttttgtaccatcacataatttttctactggaattccaactgcaccaataacctgtgaaccaacaatatcattgtcttttacaacaaagtgaa |
3115302 |
T |
|
| Q |
409 |
tctctgatgcttggtgtgcaacaggtacattaaaatgttgcatccaaacagggttctcatcatttctgatcacagaagttcttgcaatcacagcaccagc |
508 |
Q |
| |
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| |||||||| | ||||||||||||||||| || || || |||||||||||||||||| ||||| || ||| ||||||||||||| ||||||||||| |
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| T |
3115303 |
tttctgatgcaagatgtgcaacaggtacattgaagtgctgattccaaacagggttctcattgtttctaattacaaaagttcttgcaataacagcaccagc |
3115402 |
T |
|
| Q |
509 |
cacagaaactgtgacatatggatcactgg----------------tttg-gttc-attttgttaccaagtttcttaggtaggattgaaagcattgccccc |
590 |
Q |
| |
|
|||||||| || |||||||||||||||| |||| ||| |||||| ||||||||| ||||||| || ||||| |||| ||||| |
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|
| T |
3115403 |
tacagaaacagttacatatggatcactggttatattacgagacattttgccttcaattttgccaccaagttttttaggtaagactgaaaacatttccccc |
3115502 |
T |
|
| Q |
591 |
aagttcttgtgaaaagtgtccatgttaggaaggtttttggcctcttggatgcaaatttctaagttgccatgtaagagaaggatccttaaggaagttgaag |
690 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
3115503 |
actttcttgtgaaaagtgtccatgttaggaaggtttttcgcttcttggacgcatatttctaagttgccatgtaagagtaagatccttaaggaagttgaag |
3115602 |
T |
|
| Q |
691 |
tggttggaaatggaacaagttgttgaccttgt |
722 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
3115603 |
tggttggaaatggaacaagttgttgaccttgt |
3115634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 36842200 - 36842267
Alignment:
| Q |
114 |
acatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgcc |
181 |
Q |
| |
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||||| |||||||||||||| || || || || ||| ||||||| |||||||||||| |||||||||| |
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| T |
36842200 |
acatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcc |
36842267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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