View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18705_low_9 (Length: 428)
Name: NF18705_low_9
Description: NF18705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18705_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 173 - 423
Target Start/End: Original strand, 14173852 - 14174102
Alignment:
| Q |
173 |
caccttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcg |
272 |
Q |
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| T |
14173852 |
caccttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttca |
14173951 |
T |
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| Q |
273 |
ttatttcnnnnnnnctctttgattgattcatgaagaatgtcagcttcattttttgcaaatttcggatttatcccagcaccgccatatctaaacgaggtca |
372 |
Q |
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| T |
14173952 |
tgatttccttttttctctttgattgattcatgaagaatgtcagcttcagtttttgccaatttcggatttatctcagcaccgccatatctaaacgaggtca |
14174051 |
T |
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| Q |
373 |
tcaatccaaccaacagctgccgagaaaaacaaaacatattcttcatttcac |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14174052 |
ccaatccaaccaacagctgccgagaaaaacaaaacatattcttcatttcac |
14174102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 14173696 - 14173801
Alignment:
| Q |
17 |
cattgatgcatcgaatcgtagtgtgcaatgccttgtgaaaatcatcagatgcattatccaacagtttctgtaatcaaggacatgataagaatttttgtga |
116 |
Q |
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| T |
14173696 |
cattgatgcatcgaatcgtagtgtgcaatgccttgtgaaaatcatcagatgcattatccaacagtttctgtaatcaaggacatgataagaatttttgtga |
14173795 |
T |
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| Q |
117 |
acatgg |
122 |
Q |
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| T |
14173796 |
acatgg |
14173801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 393
Target Start/End: Original strand, 14152395 - 14152607
Alignment:
| Q |
181 |
ttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcgttatttcn |
280 |
Q |
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|||| |||| |||||| ||||||| ||| ||||||||||||||| ||| |||||||||||||||||| ||||||| || || ||||||| | |||| |
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| T |
14152395 |
ttatagaaaagccatgatcatctcggtaacggttgaaagttgccttaagttgagtcttgctccttgtaataaggatcctgataacttcttcaatgtttcc |
14152494 |
T |
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| Q |
281 |
nnnnnnctctttgattgattcatgaagaatgtcagcttcattttttgcaaatttcggatttatcccagcaccgccatatctaaacgaggtcatcaatcca |
380 |
Q |
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| T |
14152495 |
tttcttgtttttgacagcctcatgaagaatatcagcttcatgttttgccaaaattggattgatttcaacaccatcatatctaaatgagctcaccaatcca |
14152594 |
T |
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| Q |
381 |
accaacagctgcc |
393 |
Q |
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||||| ||||||| |
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| T |
14152595 |
accaaaagctgcc |
14152607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 5180996 - 5180899
Alignment:
| Q |
174 |
accttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttc |
271 |
Q |
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|||||| | ||||| |||||||| ||||| || || |||||||||||||||| ||| ||||||||||||||||| ||||| || |||||| ||||||| |
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| T |
5180996 |
accttactaatggagatgccatgttcatccctataacggttgaaagttgccacaagttgagtcttgctccttgtggtaagaatcctaatgacttcttc |
5180899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 5185535 - 5185438
Alignment:
| Q |
174 |
accttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttc |
271 |
Q |
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|||||||| || | |||||||||||||| || |||| ||||||||||| | ||| || || ||||||||||| ||||| |||||||| ||||||| |
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| T |
5185535 |
accttagtgatagcaatgccatggtcatgcctatagcaattgaaagttgctacaagttgtgttttgctccttgttgtaagaattctaattacttcttc |
5185438 |
T |
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