View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_high_15 (Length: 235)
Name: NF18706_high_15
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 518405 - 518197
Alignment:
| Q |
14 |
gcatagggaattgggttggaattgaacactcttctccattgaaaagaacctttgaagggaacccatctccttttgctatttgcatattcggtttgaattt |
113 |
Q |
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| T |
518405 |
gcatagggaattgggttggaattgaacactcttctccattgaaaagaacctttgaagggaacccatctccttttgctatttgcatattcggtttgaattt |
518306 |
T |
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| Q |
114 |
tttggtaaaggaaataacagattgttgttttccaggaacctttaggtatgttccattgtcttcacctatcaaataccttgttccttgtaatccttgcatg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
518305 |
tttggtaaaggaaataacagattgttgttttccaggaacctttaggtatgttccattgtcttcacctatcaaatagcttgttccttgtaatccttgcatg |
518206 |
T |
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| Q |
214 |
aaaatagtg |
222 |
Q |
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||||||||| |
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| T |
518205 |
aaaatagtg |
518197 |
T |
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