View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18706_high_6 (Length: 408)
Name: NF18706_high_6
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 1963100 - 1962730
Alignment:
| Q |
19 |
tgtgggcccaaatacatagggtggaagcgagtgtaaaggggtattagaaaagatgaccaagtgtgggacttgattacctaagactgaggaaggcatgaga |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||| || |
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| T |
1963100 |
tgtgggcccaaatacatagggtggaagcgagtgtaaaggggtattagaaaagaggaccgagtgtgggacttgattacctaagaccgaggaaggaatggga |
1963001 |
T |
|
| Q |
119 |
tttataagatagcatgccgttatatcaacatcccccaaaaacgaaatagaacatattgctctaaacaatatttatttaaatatcaacaaaccctaatcaa |
218 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1963000 |
tttataggatagcatgctgttatatcaacatcccc-aaaaacgaaatagaacatatttctctaaacagtatttatttaaatatcaacaaaccctaatcaa |
1962902 |
T |
|
| Q |
219 |
ctttttagtttattgccttaaatgaacaatttttatcaaatctattatgctacttatgtttcaaaaactgctgagttattatataagcttttgagggaag |
318 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962901 |
ctttttagtttattgccttaaaggaacaatttttatcaaatctattatgctacttatgtttcaaaaactgctgagttattatataagcttttgagggaag |
1962802 |
T |
|
| Q |
319 |
tagtgttatatgggaccttaaaaatattgtttaggtaatgatggataatgcttcaaactatgttgttgctggt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1962801 |
tagtgttatatgggaccttaaaaatattgtttaggtaatgat-gataatgcttcaaactatgttgttgctggt |
1962730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 391
Target Start/End: Original strand, 11993589 - 11993768
Alignment:
| Q |
214 |
atcaactttttagtttattgccttaaatgaacaatttttatcaaatctatt-atgctacttatgtttcaaaaactgctgagttattatataagcttttga |
312 |
Q |
| |
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|||||||||| ||| ||||| |||| |||||||||||||||||| | || || | || || |||||||| | ||||||||||||||||||||| | |
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|
| T |
11993589 |
atcaacttttcagtccattgctctaaaggaacaatttttatcaaatttgttgatatttctggtgcttcaaaaataggtgagttattatataagcttttca |
11993688 |
T |
|
| Q |
313 |
gggaagtagtgttata---tgggaccttaaaaatattgtttaggtaatgatggataatgcttcaaactatgttgttgctggt |
391 |
Q |
| |
|
|||||||||||||||| ||| || | ||||||||||| || |||||| |||||||||| |||||||||||| ||||||| |
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|
| T |
11993689 |
gggaagtagtgttatatattggcac--tgaaaatattgttcagataatgacggataatgctgcaaactatgttgctgctggt |
11993768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 391
Target Start/End: Complemental strand, 7650378 - 7650202
Alignment:
| Q |
217 |
aactttttagtttattgccttaaatgaacaatttttatcaaatctatt-atgctacttatgtttcaaaaactgctgagttattatataagcttttgaggg |
315 |
Q |
| |
|
||||||||| ||||||||| |||| ||||| |||||||||||||| || ||||| | || ||||||||||| |||| | || | ||||||||| | || |
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|
| T |
7650378 |
aactttttactttattgccctaaaggaacagtttttatcaaatctgttgatgcttcaggtgcttcaaaaactggtgagatgttgtttaagcttttcaagg |
7650279 |
T |
|
| Q |
316 |
aagtagtgttatat-gggaccttaaaaatattgtttaggtaatgatggataatgcttcaaactatgttgttgctggt |
391 |
Q |
| |
|
|||||||||||||| | || | ||||| ||||| || || ||| ||||||||| |||||||||||| ||||||| |
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|
| T |
7650278 |
aagtagtgttatatattggccctgaaaatgttgttcagatagtgacagataatgctgcaaactatgttgctgctggt |
7650202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 41490663 - 41490806
Alignment:
| Q |
19 |
tgtgggcccaaatacatagggtggaagcgagtgtaaaggggtattagaaaagatgaccaagtgtgggacttgattacctaagactgaggaaggcatgaga |
118 |
Q |
| |
|
||||| |||||| ||| ||||||||| ||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||| |||||||||||| || |
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|
| T |
41490663 |
tgtggacccaaacacacggggtggaagtgagtgtaaaggggtattaggaaaaaggaccgagtgtgggacttgattacctaagaccgaggaaggcatgcga |
41490762 |
T |
|
| Q |
119 |
tttataagatagcatgccgttatatcaacatcccccaaaaacga |
162 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||||| |
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|
| T |
41490763 |
tttataagatagcatgccgttagaacagcatcccccaaaaacga |
41490806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 55254271 - 55254125
Alignment:
| Q |
19 |
tgtgggcccaaatacatagggtggaagcgagtgtaaaggggtattagaaaagatgaccaagtgtgggacttgattacctaagactgaggaaggcatgaga |
118 |
Q |
| |
|
||||| |||||| ||| ||||||||| ||||||||||||||||| | ||| | |||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
55254271 |
tgtggacccaaacacacggggtggaagtgagtgtaaaggggtattcggaaaaaggaccgagtgtgggacttgattacctaagactgaggaaggcatgcga |
55254172 |
T |
|
| Q |
119 |
tttataagatagcatgccgttatatcaacat-cccccaaaaacgaaa |
164 |
Q |
| |
|
|||||||||||||||||| ||| | || ||| ||||||||||||||| |
|
|
| T |
55254171 |
tttataagatagcatgcctttagaacaccatccccccaaaaacgaaa |
55254125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 14168330 - 14168426
Alignment:
| Q |
19 |
tgtgggcccaaatacatagggtggaagcgagtgtaaaggggtattagaaaagatgaccaagtgtgggacttgattacctaagactgaggaaggcatg |
115 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||||| |||||||| ||| | ||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
14168330 |
tgtggacccaaacacacggggtggaagcgagtgtaaagaggtattaggaaaaaggactgagtgtgggacttgattacctaagactaaggaaggcatg |
14168426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 51601435 - 51601263
Alignment:
| Q |
221 |
ttttagtttattgccttaaatgaacaatttttatcaaatctatt-atgctacttatgtttcaaaaactgctgagttattatataagcttttgagggaagt |
319 |
Q |
| |
|
||||||||||||||| |||| |||| ||||||||||||||| || ||||| || || ||||||||||| |||| | || | ||||||||| | |||||| |
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|
| T |
51601435 |
ttttagtttattgccctaaaggaacgatttttatcaaatctgttgatgcttctggtgcttcaaaaactggtgagatgttgtttaagcttttcaaggaagt |
51601336 |
T |
|
| Q |
320 |
agtgttatat-gggaccttaaaaatattgtttaggtaatgatggataatgcttcaaactatgttgttgctggt |
391 |
Q |
| |
|
|||||||||| | || | ||||| ||||| || || ||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
51601335 |
agtgttatatattggccctgaaaatgttgttcagatagtgacagataatgctgcaaactatgttgctgctggt |
51601263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 29027626 - 29027512
Alignment:
| Q |
217 |
aactttttagtttattgccttaaatgaaca-atttttatcaaatctatt-atgctacttatgtttcaaaaactgctgagttattatataagcttttgagg |
314 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||||||||| || ||||| || || |||||||||| |||| | || | ||||||||| | | |
|
|
| T |
29027626 |
aactttttagtttattgccctaaaggaacagttttttatcaaatctgttgatgcttctggtgcttcaaaaactagtgagatgttgtttaagcttttcaag |
29027527 |
T |
|
| Q |
315 |
gaagtagtgttatat |
329 |
Q |
| |
|
||||||||||||||| |
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|
| T |
29027526 |
gaagtagtgttatat |
29027512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 24234405 - 24234522
Alignment:
| Q |
19 |
tgtgggcccaaatacatagggtggaagcgagtgtaaaggggtattagaaaagatgaccaagtgtgggacttgattacctaagactgaggaaggcatgaga |
118 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||| ||||||| |||| | |
|
|
| T |
24234405 |
tgtggacccaaacacacggggtggaagcgagtgtaaaagggtattaggaaaatggaccgagtgtgggacttgattacctaagaccgaggaagacatgtaa |
24234504 |
T |
|
| Q |
119 |
tttataagatagcatgcc |
136 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24234505 |
tttataagatagcatgcc |
24234522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 391
Target Start/End: Complemental strand, 21291903 - 21291727
Alignment:
| Q |
217 |
aactttttagtttattgccttaaatgaacaatttttatcaaatctatt-atgctacttatgtttcaaaaactgctgagttattatataagcttttgaggg |
315 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||||||||| || ||||| | || ||||||||||| |||| | || | ||||||||| | || |
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|
| T |
21291903 |
aactttttagtttattgccctaaaggaacagtttttatcaaatctgttgatgcttcaggtgcttcaaaaactggtgagatgttgtttaagcttttcaagg |
21291804 |
T |
|
| Q |
316 |
aagtagtgttatat-gggaccttaaaaatattgtttaggtaatgatggataatgcttcaaactatgttgttgctggt |
391 |
Q |
| |
|
|| ||||||||||| | || | ||||| ||||| || || ||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
21291803 |
aaatagtgttatatattggccctgaaaatgttgttcagatagtgacagataatgctgcaaactatgttgctgctggt |
21291727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 14893025 - 14893086
Alignment:
| Q |
38 |
ggtggaagcgagtgtaaaggggtattagaaaagatgaccaagtgtgggacttgattacctaa |
99 |
Q |
| |
|
|||||||| ||||||||| |||||||||| || | || |||||||||||||||||||||| |
|
|
| T |
14893025 |
ggtggaagagagtgtaaatgggtattagacaaaaggatagagtgtgggacttgattacctaa |
14893086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 391
Target Start/End: Complemental strand, 3754808 - 3754632
Alignment:
| Q |
217 |
aactttttagtttattgccttaaatgaacaatttttatcaaatctatt-atgctacttatgtttcaaaaactgctgagttattatataagcttttgaggg |
315 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||||||||| || ||||| | || ||||||||||| |||| | || | ||||||||| | || |
|
|
| T |
3754808 |
aactttttagtttattgccctaaaggaacagtttttatcaaatctgttgatgcttcaggtgcttcaaaaactggtgagatgttgtttaagcttttcaagg |
3754709 |
T |
|
| Q |
316 |
aagtagtgttatat-gggaccttaaaaatattgtttaggtaatgatggataatgcttcaaactatgttgttgctggt |
391 |
Q |
| |
|
|| ||||||||||| | || | ||||| ||||| || || ||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
3754708 |
aaatagtgttatatattggccctgaaaatgttgttcagatagtgacagataatgctgcaaactatgttgctgctggt |
3754632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 14637703 - 14637590
Alignment:
| Q |
217 |
aactttttagtttattgccttaaatgaacaatttttatcaaatctatt-atgctacttatgtttcaaaaactgctgagttattatataagcttttgaggg |
315 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||||||||| || ||||| | || ||||||||||| |||| | || | ||||||||| | || |
|
|
| T |
14637703 |
aactttttagtttattgccctaaaggaacagtttttatcaaatctgttgatgcttcaggtgcttcaaaaactggtgagatgttgtttaagcttttcaagg |
14637604 |
T |
|
| Q |
316 |
aagtagtgttatat |
329 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
14637603 |
aaatagtgttatat |
14637590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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