View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_high_7 (Length: 398)
Name: NF18706_high_7
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 8773728 - 8774107
Alignment:
| Q |
1 |
agcagaattgtagcagtgttgtgaaccacatcaacccaacaaggctaacagaaacattagaggaaagaagaaagcaacaatcttttctgtgaatcattaa |
100 |
Q |
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| T |
8773728 |
agcagaattgtagcagtgttgtgaaccacatcaacccaacaaggctaacagaaacattagaggaaagaagaaagcaacaatcttttctgtgaatcattaa |
8773827 |
T |
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| Q |
101 |
atgcagtaaacggaatgagagagattgatcaaatcaaaaggagacaaaaacttcatttaattgtactctgagtagctgatcaaaatactatatattttgt |
200 |
Q |
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| T |
8773828 |
atgcagtaaacggaatgagagagattgatcaaatcaaaaggagacaaaaacttcatttaattgtactctgagtagctgatcaaaatactatatattttgt |
8773927 |
T |
|
| Q |
201 |
attctannnnnnnatacatagatttgactaaggtctaaatatgtaattcaattccatgattttcatttccctctttaggtaaatctcaaattatggattt |
300 |
Q |
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| T |
8773928 |
attctatttttttatacatagatttgactaaggtctaaatatgtaattcaattccatgattttcatttccctctttaggtaaatctcaaattatggattt |
8774027 |
T |
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| Q |
301 |
ttccattttctattttctcctcttgactcaaatcccaagctaatcaaactcattcatcacttctaaatagtactactaaa |
380 |
Q |
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| T |
8774028 |
ttccattttctattttctcttattgactcaaatcccaagctaatcaaactcattcatcacttctaaatagtactactaaa |
8774107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 48597662 - 48597617
Alignment:
| Q |
16 |
gtgttgtgaaccacatcaacccaacaaggctaacagaaacattaga |
61 |
Q |
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||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
48597662 |
gtgttgtgatcgacatcaacccaacaaggctaactgaaacattaga |
48597617 |
T |
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