View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_low_1 (Length: 697)
Name: NF18706_low_1
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 621; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 7 - 679
Target Start/End: Complemental strand, 2017162 - 2016491
Alignment:
| Q |
7 |
tccaagaaaattacatctacaaaacaaaattatcgtcatcatctatcaatccagcttattcttttgctgttaatgatgttgtaagtttatcaatattggc |
106 |
Q |
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| T |
2017162 |
tccaacaaaattacatctacaaaacaaa-ttatcgtcatcatctatcaatccagcttattcttttgctgttaatgatgttgtaagtttatcaatattggt |
2017064 |
T |
|
| Q |
107 |
atataaccattctgtgtaaaaatttggctctgaggaatttatcaatgtgagtagaagacagacaagttaacattgcagttaatttgcaccaacaaatgag |
206 |
Q |
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| T |
2017063 |
atataaccattctgtgtaaaaatttggctctgaggaatttatcaatgtgagtagaagacagacaagttaacattgcagttaatttgcaccaacaaatgag |
2016964 |
T |
|
| Q |
207 |
atatttgaaatagaatgcaaacaacatggcgaagccttaaaccttacaccaagtcattaacatatccgaaatgtagcaaattagaattcaaaatccgact |
306 |
Q |
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| T |
2016963 |
atatttgaaacagaatgcaaacaacatggcgaagccttaaaccttacaccaagtcattaacatatccgaaatgtagcaaattagaattcaaaatccgact |
2016864 |
T |
|
| Q |
307 |
tagttgcattgcatgcattgaaccaaagatgtgttgaatgatgcttactttctcaattgccacaacatgaccaagactacaaagcgcagacaaggaatga |
406 |
Q |
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| T |
2016863 |
tagttgcattgtatgcattgaaccaaagatgtgttgaatgatgcttactttctcaattgccacaacatgaccaagactacaaagcgcagacaaggaatga |
2016764 |
T |
|
| Q |
407 |
agaatgcagacaatacctcctccggtcatttttataagagacgaatagatcaataaaattgatgtatttggtctatataagaaccaattacatcaacttt |
506 |
Q |
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| T |
2016763 |
agaatgcagacaatacctcctccagtcatttttataagagacgaatagatcaataaaattgatgtatttggtctatataagaaccaattacatcaacttt |
2016664 |
T |
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| Q |
507 |
tattgactcatttgtcacttctaaaaaggtccatagggagtacaatagtaaactcaaactagtgattaattaattaaaaggtatttgcatacaaaatgat |
606 |
Q |
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| T |
2016663 |
tatcgactcatttgtcacttataaaaaagtccagagggagtacaatagtaaactcaaattagtgattaattaattaaaaggtatttgcatacaaaatgat |
2016564 |
T |
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| Q |
607 |
ttcacttgcagaataacaaaaaaccgcacatgacacatggttaattgaataacaaaatgatcaacaaagtaag |
679 |
Q |
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| T |
2016563 |
ttcacttgcagaataacaaaaaaccgcacatgccacatggttaattgaataacaaaatgatcaacaaagtaag |
2016491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 313 - 422
Target Start/End: Complemental strand, 2015174 - 2015061
Alignment:
| Q |
313 |
cattgcatgcattgaaccaaagatgtgttgaatgatgcttactttctcaattgccacaac---atgaccaagactacaaagcgcagacaaggaatg-aag |
408 |
Q |
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| T |
2015174 |
cattacatgcattgaaccaaagaagccctgaatgattcttactttctcgattgccaaaacacgaggaccaagactactaagtgtagacaaggtatgaaaa |
2015075 |
T |
|
| Q |
409 |
aatgcagacaatac |
422 |
Q |
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| T |
2015074 |
aatgcagacaatac |
2015061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 548
Target Start/End: Original strand, 30443733 - 30443858
Alignment:
| Q |
425 |
cctccggtcatttttataagagacgaatagatcaataaaa-ttgatgtatttggtctatataa-gaaccaattacatcaacttttattgactcatttgtc |
522 |
Q |
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| T |
30443733 |
cctcccgtcttttttataagaaacaaatgggtcaacaaaagttaatgtatttggtctatattatgaaccaaatacatcaactttagttgaccaatttgtc |
30443832 |
T |
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| Q |
523 |
acttctaaaaaggtccatagggagta |
548 |
Q |
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| T |
30443833 |
tcttgtaaaaaggaccggagggagta |
30443858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 48050972 - 48051033
Alignment:
| Q |
487 |
gaaccaattacatcaacttttattgactcatttgtcacttctaaaaaggtccatagggagta |
548 |
Q |
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||||||| |||||||||||| ||||| ||||||| ||| |||||||| |||||||||||| |
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| T |
48050972 |
gaaccaaatacatcaactttagttgaccaatttgtctcttataaaaaggaccatagggagta |
48051033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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