View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18706_low_10 (Length: 345)

Name: NF18706_low_10
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18706_low_10
NF18706_low_10
[»] chr5 (5 HSPs)
chr5 (15-265)||(7141307-7141557)
chr5 (43-264)||(7154105-7154326)
chr5 (84-164)||(7131652-7131732)
chr5 (267-328)||(7154477-7154539)
chr5 (264-328)||(7141704-7141769)
[»] chr6 (3 HSPs)
chr6 (85-256)||(12425433-12425604)
chr6 (85-256)||(12268081-12268252)
chr6 (47-129)||(12438646-12438728)
[»] chr4 (2 HSPs)
chr4 (85-265)||(55958653-55958833)
chr4 (88-257)||(55955105-55955274)
[»] chr3 (1 HSPs)
chr3 (263-329)||(22986270-22986337)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 7141307 - 7141557
Alignment:
Q  15 tattgaattctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141307 tattgaattctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgat 7141406  T
Q  115 gaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttac 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141407 gaaaaatccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttac 7141506  T
Q  215 ttaaagttagtgatcaaagaaacattgaggttacacccaccttctcctttg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141507 ttaaagttagtgatcaaagaaacattgaggttacacccaccttctcctttg 7141557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 43 - 264
Target Start/End: Original strand, 7154105 - 7154326
Alignment:
Q  43 atttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggca 142  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||  | || |||    
T  7154105 atttcaggacgtatttgttgccggaactgatacaacatcgacaacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagca 7154204  T
Q  143 caagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattga 242  Q
    ||||||||| ||||| |||||||||| || ||| || |||||| |||| ||||| || |  |||||| |||||| ||||||||||||||||||||| |||    
T  7154205 caagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatga 7154304  T
Q  243 ggttacacccaccttctccttt 264  Q
    |||||||||||||||| |||||    
T  7154305 ggttacacccaccttcaccttt 7154326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 7131652 - 7131732
Alignment:
Q  84 caacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcat 164  Q
    ||||||||| |||||| ||||||||| |||||||||| ||||| |||| ||| ||||||||||||||| ||||| ||||||    
T  7131652 caacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagcat 7131732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 7154477 - 7154539
Alignment:
Q  267 tagttttattgatttcaaaggaaataactttgagtatattcc-tttggtgctagaaggagaat 328  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||| |||||    
T  7154477 tagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaat 7154539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 7141704 - 7141769
Alignment:
Q  264 tgatagttttattgatttcaaaggaaataactttgagtatattccttt-ggtgctagaaggagaat 328  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||| ||||||||||    
T  7141704 tgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaat 7141769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 85 - 256
Target Start/End: Complemental strand, 12425604 - 12425433
Alignment:
Q  85 aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata 184  Q
    ||||||||| ||||||||||||||  | |||||||| |||||||||| ||||||||||||||||||| ||||| ||||  | || |||||| |   ||||    
T  12425604 aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaata 12425505  T
Q  185 tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacct 256  Q
    ||||| | |||| || | |||||  | ||||| ||||||||||||||||||||  |||||||||||||||||    
T  12425504 tatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacct 12425433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 12268081 - 12268252
Alignment:
Q  85 aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata 184  Q
    ||||||||| ||||||||||||||  | |||||||| || |||||||||| ||| |||||||||||| ||||| |||  |  || |||||| |   |||     
T  12268081 aacaatagattgggctatgtcagagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataagagaagtttgtaaaggtaagaagagaatt 12268180  T
Q  185 tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacct 256  Q
    ||||||| |||| |  |  |||| |||||||| |||| |||||||||||||||  |||||||||||||||||    
T  12268181 tatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaaaccctgaggttacacccacct 12268252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 12438728 - 12438646
Alignment:
Q  47 caggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagt 129  Q
    |||||| ||||| ||||||||| ||  |||||| | |||||  ||||||||||  | ||||||||| ||||||||||||||||    
T  12438728 caggatatattttttgctggaagtgggacatcagctacaactttagaatgggccttttcagaaatgttgaaaaatccaagagt 12438646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 265
Target Start/End: Complemental strand, 55958833 - 55958653
Alignment:
Q  85 aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata 184  Q
    ||||||||| ||||| ||||||||  |||||||||| |||||||||| ||||||||||||| ||||| ||||| || | || || |||||  |   || |    
T  55958833 aacaatagactgggcaatgtcagagttgatgaaaaacccaagagtgatgaagaaggcacaatctgaaataagagaaacctttaaaggtaaaaagagaaca 55958734  T
Q  185 tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccaccttctcctttg 265  Q
    ||||| | |||| || |  |||| |||||||| || | |||||||||||||||  |||||||||| |||||| || |||||    
T  55958733 tatgagagtgatctacaagaacttagttacttgaattcagtgatcaaagaaactatgaggttacatccacctgctactttg 55958653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 55955274 - 55955105
Alignment:
Q  88 aatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatat 187  Q
    |||||| ||||||||||||||  ||||||||||  ||||||||| |||||| |||||| | ||| ||||| ||||  | || || ||  |   |||||||    
T  55955274 aatagagtgggctatgtcagagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatat 55955175  T
Q  188 gaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacctt 257  Q
    || | |||| || |  |||| |||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  55955174 gagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt 55955105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 329
Target Start/End: Complemental strand, 22986337 - 22986270
Alignment:
Q  263 ttgatagttttattgatttcaaaggaaataactttgagtatattcc-tttggtgctagaaggagaatt 329  Q
    ||||||||| ||||||||||||||||| ||| |||||||| ||||| ||||||||| |||||||||||    
T  22986337 ttgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaaggagaatt 22986270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University