View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_low_11 (Length: 329)
Name: NF18706_low_11
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 37171957 - 37171652
Alignment:
| Q |
16 |
cagaaacaagttaaaaactggtacactacctaattatacctctttaaacagatcgatgatgagttgtaactaaaccctttcggtttaggtagggagtaaa |
115 |
Q |
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| T |
37171957 |
cagaaacaagttaaaaactggtacgctacctaatgatacctctttaaacagatcgatgatgagtggtaactaaaccctttcggtttaggtagggagtaaa |
37171858 |
T |
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| Q |
116 |
ctatcacaatatattaatttcattgagtttttaaatagtattaacgagaactacatactgccatcattttacatttttctacgttgacgaatttctattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37171857 |
ctatcacaatatattaatttcattgagtttttaaatagtattaacgagaactacatactgccatcattttacatttttctacgttgacgaatttctattt |
37171758 |
T |
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| Q |
216 |
gtgtagtataatattgacttcataatgcattttggcagtgttcaaaaatgtgagtagggaagaagaaaagaaacaaagcaacgaatcttctccatttagt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37171757 |
gtgtagtataatattgacttcataatgcattttggcagtgttcaaaaatgtgagtagggaagaagaaaagaaacaaagcaacgaatcttctccgtttagt |
37171658 |
T |
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| Q |
316 |
attatc |
321 |
Q |
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|||||| |
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| T |
37171657 |
attatc |
37171652 |
T |
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