View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18706_low_13 (Length: 284)

Name: NF18706_low_13
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18706_low_13
NF18706_low_13
[»] chr4 (7 HSPs)
chr4 (23-211)||(7636856-7637044)
chr4 (23-192)||(7615061-7615230)
chr4 (23-192)||(7628499-7628668)
chr4 (23-169)||(7606070-7606216)
chr4 (59-174)||(7656312-7656424)
chr4 (70-135)||(39075095-39075160)
chr4 (68-138)||(39097553-39097623)
[»] chr7 (3 HSPs)
chr7 (23-208)||(8913728-8913913)
chr7 (27-204)||(8936235-8936412)
chr7 (23-172)||(8941875-8942024)
[»] chr3 (2 HSPs)
chr3 (26-159)||(40147507-40147640)
chr3 (56-135)||(8102323-8102402)
[»] chr6 (1 HSPs)
chr6 (56-167)||(6500335-6500446)
[»] scaffold0190 (1 HSPs)
scaffold0190 (69-167)||(4292-4390)
[»] chr8 (1 HSPs)
chr8 (71-122)||(34174002-34174053)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 7637044 - 7636856
Alignment:
Q  23 cgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7637044 cgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagg 7636945  T
Q  123 gaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatattgttaag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7636944 gaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatattgttaag 7636856  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 7615230 - 7615061
Alignment:
Q  23 cgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagg 122  Q
    |||||||||||||||  |||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||| | | ||||||||||||||    
T  7615230 cgtagtggatataaaggaaatggacttattacggtttttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggagg 7615131  T
Q  123 gaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaat 192  Q
     |||||||||||||||  | ||||||||||||| |||||||||||||| | ||| |||||||||||||||    
T  7615130 caatgggaaatgaccctcaattcatggatgttgcgtccaactaatgcaacatgatgtgtgtaaaatcaat 7615061  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 7628668 - 7628499
Alignment:
Q  23 cgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagg 122  Q
    ||||||||||||||||| || |||||| |||  |||||||| |||||||||||||||||||||||||||||| | |||||||||   |||||||||||||    
T  7628668 cgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggagg 7628569  T
Q  123 gaatgggaaatgaccc-caatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaat 192  Q
     ||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||||||||    
T  7628568 caatgggaaatgaccctcaattt-gtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaat 7628499  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 7606216 - 7606070
Alignment:
Q  23 cgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagg 122  Q
    |||||||||||||||||||||||| || | |  |||||||| |||||||||||||||||||||||||||||||| |||||||||    || |||||||||    
T  7606216 cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggagg 7606117  T
Q  123 gaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgc 169  Q
     |||||||| ||||||  ||||||||||||| ||| |||||||||||    
T  7606116 caatgggaagtgacccacatttcatggatgtcgtgaccaactaatgc 7606070  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 7656312 - 7656424
Alignment:
Q  59 tttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgt 158  Q
    ||||| ||||||||||||| ||| |||||||||||||| |||||||||    |||||||||||| |||||||||||| ||  | ||||||||| | ||      
T  7656312 tttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatggatatggt-- 7656409  T
Q  159 ccaactaatgcagcgt 174  Q
     |||||||||||||||    
T  7656410 -caactaatgcagcgt 7656424  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 39075160 - 39075095
Alignment:
Q  70 agaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatga 135  Q
    ||||||||||||| ||||  |||||||||||||||||  ||| ||||||||||  |||||||||||    
T  39075160 agaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatga 39075095  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 39097623 - 39097553
Alignment:
Q  68 atagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccc 138  Q
    ||||||||||||||||||||  || ||||||| ||| ||  ||| ||||||||||  ||||||||||||||    
T  39097623 atagaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatgaccc 39097553  T

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Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 8913728 - 8913913
Alignment:
Q  23 cgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagg 122  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  8913728 cgtagtggatataaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagg 8913827  T
Q  123 gaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatattgtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8913828 gaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatattgtt 8913913  T

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Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 8936235 - 8936412
Alignment:
Q  27 gtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaat 126  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||    
T  8936235 gtggatataaagcaaatggacttattacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaat 8936334  T
Q  127 gggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatat 204  Q
    ||||||||||||  | ||||||||||||| |||||||||||||| | ||| ||||||||||||||| || ||||||||    
T  8936335 gggaaatgaccctcaattcatggatgttgcgtccaactaatgcaacatgatgtgtgtaaaatcaatttggtacaatat 8936412  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 8941875 - 8942024
Alignment:
Q  23 cgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagg 122  Q
    |||||||||||||||||||||||| || | |  |||||||| |||||||||||||||||||||||||||||||| |||||||||   ||| |||||||||    
T  8941875 cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacgaggttttggagg 8941974  T
Q  123 gaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagc 172  Q
     |||||||| ||||||   |||||||||||| ||| |||| |||||||||    
T  8941975 caatgggaagtgacccacgtttcatggatgtcgtgaccaaataatgcagc 8942024  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 40147507 - 40147640
Alignment:
Q  26 agtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaa 125  Q
    |||||| ||||||||| |||| | ||||| |||||||| |||| |||||||||||| || ||| ||||||| ||||||||||   |||||||||||| ||    
T  40147507 agtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaa 40147606  T
Q  126 tgggaaatgaccccaatttcatggatgttgtgtc 159  Q
    ||||||||||||   | |||||||||||||||||    
T  40147607 tgggaaatgaccatgacttcatggatgttgtgtc 40147640  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 8102402 - 8102323
Alignment:
Q  56 gtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatga 135  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||||||||   |||||||||||| ||||||||||||    
T  8102402 gtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 8102323  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 6500446 - 6500335
Alignment:
Q  56 gtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttg 155  Q
    |||||||| |||| |||| |||||||||| |||||||||||||||||||||    ||| |||||| | |||| |  ||||||| ||||||||||||| ||    
T  6500446 gtatttgctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctg 6500347  T
Q  156 tgtccaactaat 167  Q
    ||||||||||||    
T  6500346 tgtccaactaat 6500335  T

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Target: scaffold0190 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 4390 - 4292
Alignment:
Q  69 tagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaat 167  Q
    ||||||| ||||| || |||||| |||| ||||||||| |||| |||||||||| |||  ||||||| ||  | || ||||||||||||||| ||||||    
T  4390 tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctgagtttatggatgttgtgtcctactaat 4292  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 34174053 - 34174002
Alignment:
Q  71 gaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagg 122  Q
    |||||||||||||||||  |||||||||||||||||  ||| ||||||||||    
T  34174053 gaagaaggtagtattgatattcaagtttgtcttccttatgatattttggagg 34174002  T

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