View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18706_low_15 (Length: 268)
Name: NF18706_low_15
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_low_15 |
 | |
|
| [»] scaffold0330 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 36977020 - 36976768
Alignment:
| Q |
11 |
ttatactttccccttagtaagatagagttagacatatcaatttaatccaccagggacaagtaatagtatgtggtgaaattctatgatttgtaggcataag |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36977020 |
ttattctttccccttagtaagatagagttagacatatcaatttaatccaccagggacaagtaagagtatgtggtgaaattctatgatttgtaggcataag |
36976921 |
T |
|
| Q |
111 |
ttgttatttcagatgacaatttcgaaatttataccatgcatatgtttcaattacatgtgagagagtaagtccccgccttaactaactatccaaccgcgta |
210 |
Q |
| |
|
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36976920 |
ttgttcttttagatgacaatttcaaaatttataccatgcatatgtttcaattacatgtgagagagtaagtccccgccttaactaactatccaatcgcgta |
36976821 |
T |
|
| Q |
211 |
cagatccttgtaggcttgatgaccctatacccaatatatcacgtatgaccatt |
263 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
36976820 |
cagatccttgtaggcttgatgatcctatacccaatatatcacgtatgaacatt |
36976768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 27820441 - 27820597
Alignment:
| Q |
20 |
ccccttagtaagatagagttagacatatcaatttaatccaccagggacaagtaatagtatgtggtgaaattctatgatttgtaggcataagttgttattt |
119 |
Q |
| |
|
||||||| ||||||| | ||||||||| |||||||| || ||||||||||| |||| ||||||||||||| ||||| |||| | |||| ||| ||| |
|
|
| T |
27820441 |
ccccttattaagatatggatagacatattcatttaatcaactagggacaagtatatgtatctggtgaaattctaagatttttaggtaaaagtggttcttt |
27820540 |
T |
|
| Q |
120 |
cagatgacaatttcgaaatttataccatgcatatgtttcaattacatgtgagagagt |
176 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||| |||||||||||| ||||| ||||| |
|
|
| T |
27820541 |
tagatgacaatttagaaatttctactatgcatgtgtttcaattacttgtgaaagagt |
27820597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 32197863 - 32197662
Alignment:
| Q |
21 |
cccttagtaagatagagttagacatatcaatttaatccaccagggacaagtaatagtatgtggtgaaattctatgatttgtaggcataagttgttatttc |
120 |
Q |
| |
|
||||||||||||||| ||||| | |||| ||||||||||| | |||||||||| |||||||||||||||||| | || || | | | || ||| || |
|
|
| T |
32197863 |
cccttagtaagatagggttaggcctatccatttaatccactaaggacaagtaagggtatgtggtgaaattctaaggttcctatgta-acgtggttccttt |
32197765 |
T |
|
| Q |
121 |
agatgacaatttcgaaatttataccatgcatatgtttcaattacatgtgagagagtaagtccccgccttaactaactatccaaccgcgtacagatccttg |
220 |
Q |
| |
|
|||| ||||||| | ||||| ||| ||| ||||||| |||||| ||||||||||||||||||| |||||| ||||||||| ||| | |||||||| ||| |
|
|
| T |
32197764 |
agattacaatttaggaatttctactatgtctatgttttaattacctgtgagagagtaagtccccaccttaa-taactatccgaccacatacagatctttg |
32197666 |
T |
|
| Q |
221 |
tagg |
224 |
Q |
| |
|
|||| |
|
|
| T |
32197665 |
tagg |
32197662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 258
Target Start/End: Complemental strand, 19964106 - 19963915
Alignment:
| Q |
66 |
acaagtaatagtatgtggtgaaattctatgatttgtaggcataagttgttatttcagatgacaatttcgaaatttataccatgcatatgtttcaattaca |
165 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||| | |||||||| | |||||||||||| ||||||| || |||| ||| ||||||||| |
|
|
| T |
19964106 |
acaagtaagggtatgtggtgaaattctaagatttctaggtaaaagttgtttccttagatgacaatttagaaatttctattatgcttataattcaattacc |
19964007 |
T |
|
| Q |
166 |
tgtgagagagtaagtccccgccttaactaactatccaaccgcgtacagatccttgtaggcttgatgaccctatacccaatatatcacgtatga |
258 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||| ||||| || ||||| |||||||||| | || ||||||| |||||||| |||||| |
|
|
| T |
19964006 |
tgtgagagagtaagtctccaccttaa-taactatatgaccgcacacggatcccggtaggcttgacggccttataccccatatatcatgtatga |
19963915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 27248003 - 27248173
Alignment:
| Q |
21 |
cccttagtaagatagagttagacatatcaatttaatccaccagggacaagtaatagtatgtggtgaaattctatgatttgtaggcataagttgttatttc |
120 |
Q |
| |
|
||||||||||||||| ||| | | |||| |||||||| | | |||||||| | ||||||||||||||| || |||| |||| | |||| ||| || |
|
|
| T |
27248003 |
cccttagtaagatagtgttgggcctatccatttaatcttctaaggacaagttagggtatgtggtgaaattttaagattcttaggtaaaagtggttccttt |
27248102 |
T |
|
| Q |
121 |
agatgacaatttcgaaatttataccatgcatatgtttcaattacatgtgagagagtaagtccccgccttaa |
191 |
Q |
| |
|
| || |||||| | ||||||||| ||||||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
27248103 |
atatatcaatttaggaatttatactatgcatatgtttcaattgcatgtgagagacaaagtctccgtcttaa |
27248173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 18746741 - 18746891
Alignment:
| Q |
79 |
tgtggtgaaattctatgatttgtaggcataagttgttatttcagatgacaatttcgaaatttataccatgcatatgtttcaattacatgtgagagagtaa |
178 |
Q |
| |
|
||||||||||||||| ||||| | || |||||||||| || |||||||||||| | |||| ||||| || |||||| |||||| | ||||||||||| |
|
|
| T |
18746741 |
tgtggtgaaattctaagatttctgggtataagttgttcctttagatgacaatttaggaattcctaccacgctaatgtttaaattacctatgagagagtaa |
18746840 |
T |
|
| Q |
179 |
gtccccgccttaactaactatccaaccgcgtacagatccttgtaggcttga |
229 |
Q |
| |
|
| || | |||||| |||||||| |||||| | | |||||||||||| |||| |
|
|
| T |
18746841 |
gcccacaccttaattaactatctaaccgcatgcggatccttgtaggattga |
18746891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 17263431 - 17263269
Alignment:
| Q |
21 |
cccttagtaagatagagttagacatatcaatttaatccaccagggacaagtaatagtatgtggtgaaattctatgatttgtaggcataagttgttatttc |
120 |
Q |
| |
|
||||||||||||||| |||| | ||| |||||||| || |||||| || || ||||||| |||||||||| |||| |||| | |||| ||| ||| |
|
|
| T |
17263431 |
cccttagtaagataggtttaggcccatccatttaatctactagggactagcaagggtatgtgatgaaattctaagattcctaggtaaaagtggttcttta |
17263332 |
T |
|
| Q |
121 |
agatgacaatttcgaaatttataccatgcatatgtttcaattacatgtgagagagtaagtcccc |
184 |
Q |
| |
|
| | |||||||| | ||||| ||| ||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
17263331 |
a-acgacaatttaggaatttctactatgtctatgtatcaattacttgtgagagagtaagtcccc |
17263269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 44810668 - 44810501
Alignment:
| Q |
25 |
tagtaagatagagttagacatatcaatttaatccaccagggacaagtaatagtatgtggtgaaattctatgatttgtaggcataagttgttatttcagat |
124 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||||||| |||| ||| ||| ||||||||| |||||||| |||| |||| |||| ||| || |||| |
|
|
| T |
44810668 |
tagtaagatagagctaggcccatccatttaatccactagggtcaattaagggtatgtggtaaaattctaagattcataggtgaaagtggtttctttagat |
44810569 |
T |
|
| Q |
125 |
gacaatttcgaaatttataccatgcatatgtttcaattacatgtgagagagtaagtccccgccttaac |
192 |
Q |
| |
|
|| ||||| ||||| | ||| |||| ||||||||||||| | |||||| |||||||| || |||||| |
|
|
| T |
44810568 |
gaaaatttagaaatatctactatgcttatgtttcaattatctatgagagtgtaagtcctcgtcttaac |
44810501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 48747510 - 48747470
Alignment:
| Q |
151 |
tatgtttcaattacatgtgagagagtaagtccccgccttaa |
191 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
48747510 |
tatgtttcaattatctatgagagagtaagtccccgccttaa |
48747470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 26270997 - 26271238
Alignment:
| Q |
18 |
ttccccttagtaagatagagttagacatatcaatttaatccaccagggacaagtaatagtatgtggtgaaattctatgatttgtaggcataagttgttat |
117 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| ||||||| | ||||||||||| |||||||||||||||||| |||| || | | |||| ||| |
|
|
| T |
26270997 |
ttccccttcgtaagataaggttaggcatatccatttaatataatagggacaagtaccggtatgtggtgaaattctaagattcctaagtaaaagtggttca |
26271096 |
T |
|
| Q |
118 |
ttcagatgacaatttcgaaatttataccatgcatatgtttcaattacatgtgagagagtaagtccccgccttaactaactatccaaccgcgtacagatcc |
217 |
Q |
| |
|
|| |||| | |||| | ||||| || |||| ||| |||||||||| |||||| |||||| | ||| ||||| | |||||| | ||||| ||| ||||| |
|
|
| T |
26271097 |
tttagattaaaattaaggaatttctattatgcctatatttcaattacctgtgagggagtaatttcccaccttatc-aactattcgaccgcatacggatcc |
26271195 |
T |
|
| Q |
218 |
ttgtaggcttgatgaccctatacccaatatatcacgtatgacc |
260 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
26271196 |
atgtaggcttgacgaccctataccatgtatatcatgtatgacc |
26271238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 34394831 - 34394783
Alignment:
| Q |
21 |
cccttagtaagatagagttagacatatcaatttaatccaccagggacaa |
69 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||| || |||||||| |
|
|
| T |
34394831 |
cccttagtaagataaagttagacttatccatttaatctactagggacaa |
34394783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 1316 - 1397
Alignment:
| Q |
11 |
ttatactttccccttagtaagatagagttagacatatcaatttaatccaccagggacaagtaatagtatgtggtgaaattct |
92 |
Q |
| |
|
|||| |||| |||||||||||||| |||||| | |||| |||||||| |||| |||||| ||| ||||||| |||||||| |
|
|
| T |
1316 |
ttattcttttcccttagtaagataaagttaggcctatccatttaatctaccatggacaattaagggtatgtgtcgaaattct |
1397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University