View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_low_16 (Length: 240)
Name: NF18706_low_16
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 8332165 - 8331939
Alignment:
| Q |
18 |
gagaggattgagacgagaaacataaagatttccagcacgatcgattgttacatctccatggcacattcaatatcctattttctcaaacatggttccttaa |
117 |
Q |
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| T |
8332165 |
gagaggattgagacgaaaaacataaagatttccagcacgatcgattgttacatctccatggcacattcaatatcctatttcctcaaacatggttctttaa |
8332066 |
T |
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| Q |
118 |
ttagacaactagaatacatgtaatctacattcc---nnnnnnntggttcttttgcaccatcctagcttcttttcatatatcttacataagagtgtgcctc |
214 |
Q |
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| T |
8332065 |
ttagacaactagaatacatgtaatctacattccaaaaaaaaaatggttcttttgcaccatcctagcttattttcatatatcttacataagagtgtgcctc |
8331966 |
T |
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| Q |
215 |
cttattgttc-tttgacaccacctttt |
240 |
Q |
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| T |
8331965 |
cttattgttcttttgacaccacctttt |
8331939 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 47569724 - 47569682
Alignment:
| Q |
158 |
tggttcttttgcaccatcctagcttcttttcatatatcttaca |
200 |
Q |
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| T |
47569724 |
tggttcttttgcaccaccctagcttattttcatatatcttaca |
47569682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 24621246 - 24621316
Alignment:
| Q |
158 |
tggttcttttgcaccatcctagcttcttttcatatatcttacata---agagtgtgcctccttattgttct |
225 |
Q |
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| T |
24621246 |
tggttgttttgcaccattctagcttatttccatatatcttacacaaggagagtgtgactccttgttgttct |
24621316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 16375855 - 16375792
Alignment:
| Q |
84 |
tcaatatcctattttctcaaacatggttccttaattagacaactagaatacatgtaatctacat |
147 |
Q |
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| T |
16375855 |
tcaatatcctattttctcaagcatgatcctttaattagaaaactacaaagcatgtaatctacat |
16375792 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 3704828 - 3704910
Alignment:
| Q |
21 |
aggattgagacgagaaacataaagatttccagcacgatcgattgttacatctccatggcacattcaatatcctattttctcaa |
103 |
Q |
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| T |
3704828 |
aggattgagacaagaaacatatagactttcagcaccatcaattattacatctcaaccatacactcaatatcctattttctcaa |
3704910 |
T |
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