View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_low_2 (Length: 636)
Name: NF18706_low_2
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 17 - 626
Target Start/End: Complemental strand, 1230382 - 1229773
Alignment:
| Q |
17 |
aaaaggtaatatcagaaagagtaatatcgaatatctttatacaacaagaaaattaatctcaccaaattaaagagagtatatcgtaagtatttttcttttc |
116 |
Q |
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| T |
1230382 |
aaaaggtaatatcagaaagagtaatatcgaatatctttatacaacaagaaaattaatctcaccaaattaaagagagtatatcgtaagtattttccttttc |
1230283 |
T |
|
| Q |
117 |
tatatgctccattgtcatattaaatttgtttgcaaattctaactactatttaatttcattttagtaactcaatcctcacatttaaaaatatataccaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1230282 |
tatatgctccattgtcatattaaatttgtttgcaaattctaactactatttaatttcattttagtaactcaatcctcacatttaaaaatatataccaata |
1230183 |
T |
|
| Q |
217 |
tattgtttgattcattttattgacattgaagagatacaaacaatagaaaaacttccattttgcaatgaaaatagtggtaccttgctacacctctgtattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1230182 |
tattgtttgattcattttattgacattgaagagatacaaacaatagaaaaacttccattttgcaatgaaaatagtggtaccttgctacacctctgtattt |
1230083 |
T |
|
| Q |
317 |
tgagactcctctagaaaatccactgctttttctacaaatcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtat |
416 |
Q |
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| T |
1230082 |
tgagactcctctagaaaatccactgctttttctacaaatcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtat |
1229983 |
T |
|
| Q |
417 |
ctctgatcaacctctccatcgaagttgttgtattaatttaatggccaaaaatattatattatggtcaaccattagacttaattcaacaaatttgatgtga |
516 |
Q |
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| T |
1229982 |
ctctgatcaatctctccatcgaagttgttgtattaatctaatggccaaaaatattatattatggtcaaccattagacttaatccaacgactttgatgtga |
1229883 |
T |
|
| Q |
517 |
ttagaaagatgtctgagtttgcggagaatcatatattataagaattttaatgaccaaaccttcttaaggatccaatatattcttcttttgattggccttc |
616 |
Q |
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|||||||||||| || ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1229882 |
ttagaaagatgttcgattttacggagaatcatatattataaggattttagtgaccaaaccttcttaaggatccgatatattcttcttttgattggccttc |
1229783 |
T |
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| Q |
617 |
catccctttg |
626 |
Q |
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|||||||||| |
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| T |
1229782 |
catccctttg |
1229773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 24989937 - 24989983
Alignment:
| Q |
294 |
taccttgctacacctctgtattttgagactcctctagaaaatccact |
340 |
Q |
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| T |
24989937 |
taccttgctactcctctatattttgatacacctctagaaaatccact |
24989983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 2051772 - 2051718
Alignment:
| Q |
295 |
accttgctacacctctgtattttgagactcctctagaaaatccactgctttttct |
349 |
Q |
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| T |
2051772 |
accttgcaacacctctatactttgagacacctcttgaaaagccactgctttttct |
2051718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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