View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_low_21 (Length: 211)
Name: NF18706_low_21
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 38873835 - 38874013
Alignment:
| Q |
14 |
ccaagaatattttctccatacaatacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactaccaaccac |
113 |
Q |
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| T |
38873835 |
ccaacaatattttctccatacaatacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactaccaaccac |
38873934 |
T |
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| Q |
114 |
attaattctctccttatattttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccac |
194 |
Q |
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| T |
38873935 |
attaat--tctccttattttttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccac |
38874013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 38776917 - 38776759
Alignment:
| Q |
37 |
tacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaact---accaaccacattaattctctccttatatt |
133 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||| || |
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| T |
38776917 |
tacacaagaggaatttaatgggaatataaaaggcgggttctcttggttgaaccgcctatgatcgaactaccaccaaccacgttaat--tctccttatttt |
38776820 |
T |
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| Q |
134 |
ttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccac |
194 |
Q |
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| T |
38776819 |
ttgaatctgacttaagtaccactaatgccagttgagtttcctgttcttctgtttttaccac |
38776759 |
T |
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