View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18706_low_3 (Length: 540)

Name: NF18706_low_3
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18706_low_3
NF18706_low_3
[»] chr7 (4 HSPs)
chr7 (17-355)||(36732736-36733076)
chr7 (384-540)||(36733144-36733306)
chr7 (78-125)||(6205407-6205454)
chr7 (78-125)||(6792779-6792826)
[»] chr1 (12 HSPs)
chr1 (17-168)||(37752509-37752660)
chr1 (32-151)||(5321571-5321690)
chr1 (17-169)||(30901862-30902016)
chr1 (78-123)||(19552755-19552800)
chr1 (24-152)||(9886377-9886505)
chr1 (78-125)||(7797868-7797915)
chr1 (78-125)||(8055142-8055189)
chr1 (78-125)||(28705316-28705363)
chr1 (78-125)||(46019186-46019233)
chr1 (78-125)||(46077336-46077383)
chr1 (78-125)||(49572822-49572869)
chr1 (78-125)||(33695937-33695984)
[»] chr5 (1 HSPs)
chr5 (17-204)||(41550089-41550277)
[»] chr6 (2 HSPs)
chr6 (81-204)||(6262130-6262254)
chr6 (84-229)||(20679159-20679305)
[»] chr8 (4 HSPs)
chr8 (35-204)||(29515112-29515282)
chr8 (78-121)||(11596891-11596934)
chr8 (78-125)||(24785153-24785200)
chr8 (78-125)||(35195792-35195839)
[»] scaffold0012 (1 HSPs)
scaffold0012 (78-125)||(109091-109138)
[»] chr4 (1 HSPs)
chr4 (78-125)||(54908301-54908348)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 36732736 - 36733076
Alignment:
Q  17 tggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| |||||||||||||||    
T  36732736 tggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatattcgtctagaaagtgattcaaaattgtttattaacatggttacaaata 36732835  T
Q  117 attgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctattaaccgtagttgacactttgaggttcatcatactcagcgataagac 216  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  36732836 attgcaagactagttggacgaccacttcgttgattcagcgtatcaaaaatctattagacgtagttgacactttgaggttcatcatacttagcgataagac 36732935  T
Q  217 aataatagaagtgcgat-----taacttgcgaatttcaacctcaccacaaattcttaaaattttgttattttagaaatccttcctaatgagcttgatagt 311  Q
       ||||||||||||||     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  36732936 ---aatagaagtgcgattaacgtaacttgcgaatttcaacctcaccacaaattcttgaaattttgttattttagaaatccctcctaatgagcttgatagt 36733032  T
Q  312 ctttcctttaatgatatttttgaatttacatgcttaaaaatatt 355  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  36733033 ctttcttttaatgatatttttgaatttacatgcttaaaaatatt 36733076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 384 - 540
Target Start/End: Original strand, 36733144 - 36733306
Alignment:
Q  384 tgaaaaaatttcaactattatctttttatcaccgattgcaatagc------acacgtttgtacctaactatagattacgtccacgtgccattacatgtgt 477  Q
    ||||||||||||||||||||||||| |||||||||||||||||||      ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36733144 tgaaaaaatttcaactattatctttctatcaccgattgcaatagcagtagcacacgtttgtatctaactatagattacgtccacgtgccattacatgtgt 36733243  T
Q  478 acaatatacattgaacccgacaaacagagctttcttcgcaaacacagacattcggtgacattt 540  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36733244 acaatatacattgaacccgacaaacagagcttttttcgcaaacacagacattcggtgacattt 36733306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 6205407 - 6205454
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  6205407 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 6205454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 6792826 - 6792779
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  6792826 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 6792779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 37752509 - 37752660
Alignment:
Q  17 tggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaata 116  Q
    |||||| ||||||| ||||| |||||||| || ||||||||| |||||||| || || || | |||||||||||||||||||||||||||||||||||||    
T  37752509 tggggtttgtattttggtttagagctagcttggcgtgatggaatttcacatctctgtatggagagtgattcaaaattgtttattgacatggttacaaata 37752608  T
Q  117 attgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatct 168  Q
    |||||||||||| | | |||||| |||| ||||||   ||||||| ||||||    
T  37752609 attgcaagactaatgggacgaccccttcattgatttggcgtatcagaaatct 37752660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 5321571 - 5321690
Alignment:
Q  32 ggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagactagtt 131  Q
    |||||||||||||| ||| |||||||| |||||||| ||  | || ||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |     
T  5321571 ggtttggagctagcttgaagtgatggaatttcacatctctatgtggaaagtgactcaaaattgcttattgatatggttacaaataattgcaagactaatg 5321670  T
Q  132 gaacgaccacttcgttgatt 151  Q
    |||||||| |||||||||||    
T  5321671 gaacgaccccttcgttgatt 5321690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 30901862 - 30902016
Alignment:
Q  17 tggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttat--tgacatggttacaaa 114  Q
    |||||| | ||| |||||||||||||||| || |||||||||||||||||| || || || || |||||| ||||||| ||||  |||||||||||||||    
T  30901862 tggggtttatatctgggtttggagctagcctggcgtgatggagtttcacatctctgtgtggaaggtgattaaaaattgcttatattgacatggttacaaa 30901961  T
Q  115 taattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatcta 169  Q
    ||||||||||||||   | ||||||  |||||||||||  ||||||| |||||||    
T  30901962 taattgcaagactaacgggacgacccattcgttgattcggcgtatcagaaatcta 30902016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 19552800 - 19552755
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaa 123  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  19552800 aaagtgattcaaaattagttattgacatggttacaaataattgcaa 19552755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 9886505 - 9886377
Alignment:
Q  24 tgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaa 123  Q
    ||||||| ||||| |||||||| || | ||||||| |||||||| |  || || ||||||||    ||||||| ||||||||||||| | ||||||||||    
T  9886505 tgtatttcggtttagagctagcttgtcatgatggaatttcacatctttgtgtggaaagtgatcatgaattgttgattgacatggttaaacataattgcaa 9886406  T
Q  124 gactagttgaacgaccacttcgttgattc 152  Q
    ||||| | | |||||| || |||||||||    
T  9886405 gactaatgggacgacccctccgttgattc 9886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 7797868 - 7797915
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  7797868 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 7797915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 8055189 - 8055142
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  8055189 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 8055142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 28705316 - 28705363
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  28705316 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 28705363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 46019233 - 46019186
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  46019233 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 46019186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 46077336 - 46077383
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||    
T  46077336 aaagtgattcaaaattgtttattgtcatgataacaaataattgcaaga 46077383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 49572869 - 49572822
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  49572869 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 49572822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 33695984 - 33695937
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    |||||||||||||| || ||||||||||||| ||||| ||||||||||    
T  33695984 aaagtgattcaaaaatgcttattgacatggtaacaaaaaattgcaaga 33695937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 41550277 - 41550089
Alignment:
Q  17 tggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaata 116  Q
    |||||| | ||||| || ||||||||||| || || ||||||||||||||| || || || || | |||||||||||| ||||||||||||||||||| |    
T  41550277 tggggtttatatttagggttggagctagcttggcgggatggagtttcacatctctgtgtggaaggcgattcaaaattgcttattgacatggttacaaaca 41550178  T
Q  117 attgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtagttgacactttgaggttcatcatact 204  Q
    | |||| ||||| | | |||||| |||||||||| |  ||||||| |||||| ||  | |||||||| ||| |||||||||||||||||    
T  41550177 actgcaggactaatgggacgaccccttcgttgatgcggcgtatcagaaatcttttggatcgtagttggcacgttgaggttcatcatact 41550089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 6262130 - 6262254
Alignment:
Q  81 gtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtag 179  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||| | | |||||| ||| |||||||| || ||||| |||||||||  |||||||    
T  6262130 gtgattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttggttgattcgacatatcagaaatctattcgaccgtag 6262229  T
Q  180 ttgacactttgaggttcatcatact 204  Q
    ||| ||| |||||||| ||||||||    
T  6262230 ttggcacgttgaggtttatcatact 6262254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 20679305 - 20679159
Alignment:
Q  84 attcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatta-accgtagttg 182  Q
    ||||||||||| | ||| |||||||||||||||||||||||| ||   | |||| | ||| ||||||||  |||||||  |||||| || | ||||||||    
T  20679305 attcaaaattgct-attaacatggttacaaataattgcaagattaacgggacgatccctttgttgattcggcgtatcaggaatctactagatcgtagttg 20679207  T
Q  183 acactttgaggttcatcatactcagcgataagacaata-atagaagtg 229  Q
     ||| ||||||||||| |||||  |||| ||| ||||| |||||||||    
T  20679206 gcacgttgaggttcattatacttggcgagaaggcaatatatagaagtg 20679159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 29515282 - 29515112
Alignment:
Q  35 ttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaa 134  Q
    ||||||||||| |||||  |||||||||||||| |  || || || | |||||||||||| |||||||||| |||| |||||| |||| ||||| | | |    
T  29515282 ttggagctagcttgacggaatggagtttcacatctatgtgtggaaggcgattcaaaattgcttattgacatagttagaaataactgcaggactaatggga 29515183  T
Q  135 cgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtagttgacactttgaggttcatcatact 204  Q
    ||| | |||||||||| | |||||||| |||||| ||  |||||||||| ||| ||||  |||||||||||    
T  29515182 cgatcccttcgttgatgcgacgtatcagaaatcttttggaccgtagttggcacattgaaattcatcatact 29515112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 11596934 - 11596891
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgc 121  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  11596934 aaagtgattcaaaattgcttattgacatggatacaaataattgc 11596891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 24785153 - 24785200
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  24785153 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 24785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 35195839 - 35195792
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  35195839 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 35195792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 109138 - 109091
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  109138 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 109091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 54908348 - 54908301
Alignment:
Q  78 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 125  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||||    
T  54908348 aaagtgattcaaaattgcttattgatatgataacaaataattgcaaga 54908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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