View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_low_5 (Length: 448)
Name: NF18706_low_5
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_low_5 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 268 - 436
Target Start/End: Complemental strand, 38424042 - 38423874
Alignment:
| Q |
268 |
cccttctttttcgatcttgatgcaatgctcattttatttaaattgaaagattgattttgatacggtgcaaatcaaattattgactttgatattctcaaca |
367 |
Q |
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| T |
38424042 |
cccttctttttcgatcttgatgcaatgctcattttatttaaattgaaagattgattttgatacggtgcaaatcaaattattgactttgacattctcaaca |
38423943 |
T |
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| Q |
368 |
ttataggtggagacataagtattctgcacacttgaatatagtcatatttattaacctctatgttgtgat |
436 |
Q |
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| T |
38423942 |
ttataggtggagacataagtattctgcacacttgaatatagtcatatttattaacctctatgttgtgat |
38423874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 38424287 - 38424153
Alignment:
| Q |
19 |
agagaaaactcacaagtaacagactcctgcaagataactcaaacgattcgtattacgttacgtacgtgaagaaatataatgagttcggagagaggtggtt |
118 |
Q |
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| T |
38424287 |
agagaaaactcacaagtaacagactcctgcaagataactcaaacgattcgtattacgttacgtacgtgaagaaatataatgagttcggagagaggtggtt |
38424188 |
T |
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| Q |
119 |
taagctcaactttcacatgaacaatcctttaaaat |
153 |
Q |
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| T |
38424187 |
taagctcaactttcacatgaacaatcctttaaaat |
38424153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 32778823 - 32778782
Alignment:
| Q |
375 |
tggagacataagtattctgcacacttgaatatagtcatattt |
416 |
Q |
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| T |
32778823 |
tggagacatgagtattctggagacttgaatatagtcatattt |
32778782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 21240 - 21280
Alignment:
| Q |
376 |
ggagacataagtattctgcacacttgaatatagtcatattt |
416 |
Q |
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| T |
21240 |
ggagacatgagtattctggagacttgaatatagtcatattt |
21280 |
T |
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