View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18706_low_9 (Length: 377)
Name: NF18706_low_9
Description: NF18706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18706_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 24 - 370
Target Start/End: Original strand, 39823447 - 39823793
Alignment:
| Q |
24 |
agaaaaacaataactttattattcatagaatacaaaaagaggcaaaaatgttgaactagttaagcaggtaaccaagcagaagcaaaaacaacattatgac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39823447 |
agaaaaacaataactttattattcatagaatacaaaaagaggcaaaaatgttgaactagttaagcaggtaaccaagcagaagcaaaaacaacattatggc |
39823546 |
T |
|
| Q |
124 |
ctttccaagtaagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcacc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39823547 |
ctttccaagtaagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcacc |
39823646 |
T |
|
| Q |
224 |
aaatccaatcccttgaaaattagcatttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcaca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39823647 |
aaatccaatcccttgaaaattagcatttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcaca |
39823746 |
T |
|
| Q |
324 |
ttttcaatcttccaacaaatatctgcttcataccattgcctttgctt |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39823747 |
ttttcaatcttccaacaaatatctgcttcataccattgcctttgctt |
39823793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 367
Target Start/End: Complemental strand, 5617905 - 5617627
Alignment:
| Q |
89 |
aggtaaccaagcagaagcaaaaacaacattatgacctttccaagtaagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatca |
188 |
Q |
| |
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||||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||| | ||||| |||||| |
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| T |
5617905 |
aggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaactcgtcttctttcttcaatccccatccaactgcatgctcatca |
5617806 |
T |
|
| Q |
189 |
agcatagctttcacctcaccaacacattcctcaccaaatccaatcccttgaaaattagcatttctcattctttgttcccatttgcttataggttcaactc |
288 |
Q |
| |
|
||||| || || ||||| ||| | ||||||| || | || |||||||||| ||||||||||||| || ||||| ||| || ||| || |||| |
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| T |
5617805 |
agcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttggttttagactcgactc |
5617706 |
T |
|
| Q |
289 |
tctcaactctttgaacaccttcatgagctatcacattttcaatcttccaacaaatatctgcttcataccattgcctttg |
367 |
Q |
| |
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|||| |||||||||| ||||||| ||||||||||| |||| |||||||||||| || ||||| |||| |||||||| |
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|
| T |
5617705 |
tctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgcaccactgcctttg |
5617627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 367
Target Start/End: Complemental strand, 21163192 - 21162914
Alignment:
| Q |
89 |
aggtaaccaagcagaagcaaaaacaacattatgacctttccaagtaagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatca |
188 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||| | ||||| |||||| |
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|
| T |
21163192 |
aggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaactcgtcttctttcttcaatccccatccaactgcatgctcatca |
21163093 |
T |
|
| Q |
189 |
agcatagctttcacctcaccaacacattcctcaccaaatccaatcccttgaaaattagcatttctcattctttgttcccatttgcttataggttcaactc |
288 |
Q |
| |
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||||| || || ||||| ||| | ||||||| || | || |||||||||| ||||||||||||| || ||||| ||| || ||| || |||| |
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| T |
21163092 |
agcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttggttttagactcgactc |
21162993 |
T |
|
| Q |
289 |
tctcaactctttgaacaccttcatgagctatcacattttcaatcttccaacaaatatctgcttcataccattgcctttg |
367 |
Q |
| |
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|||| |||||||||| ||||||| ||||||||||| |||| |||||||||||| || ||||| |||| |||||||| |
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| T |
21162992 |
tctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgcaccactgcctttg |
21162914 |
T |
|
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