View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_high_1 (Length: 1216)
Name: NF18707_high_1
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_high_1 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 720 - 1169
Target Start/End: Complemental strand, 8014304 - 8013833
Alignment:
| Q |
720 |
aggaaacttattatacttacttgttaacacctacgaatattttatgnnnnnnnnnnnncttttcgaaaaagaa--tataaacatggtaaacatctagatt |
817 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| || ||||||||| ||||||||||| ||| |
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| T |
8014304 |
aggaaacttattatacttacttgttaacacctacgaatattttatgttttttttt----tttgcaaaaaaaaaaatataaacattgtaaacatctaaatt |
8014209 |
T |
|
| Q |
818 |
agatttagctgaatcttctttatcgcttaataaatgatagtccaactagnnnnnnntcaaatatagaagaaatgtttctcaagtcaactatagcttatgt |
917 |
Q |
| |
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|||||||||||||||| || || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
8014208 |
agatttagctgaatctcctctaccgcttaataaataatagtccaactagaaaaaa-tcaaatatagaagaaatgtttctcaagtcaactacaacttatgt |
8014110 |
T |
|
| Q |
918 |
cggatcgtgagtgtcagaattagtcaaatatacacg----------------cgttttatttgtgcgttatatttataaaattaccaattggaacatcta |
1001 |
Q |
| |
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|||||||||| ||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8014109 |
cggatcgtgaatgttagaattagtcaaatatatacggagcttgacaattcaacgttttacttgtgcgttatatttataaaattaccaattggaacatcta |
8014010 |
T |
|
| Q |
1002 |
tttttacggcgaatgacctgaggtaatagtgcacatgtgaataagaaaaacggaaaatgaaacgagatgggggagaacga---------gggacaaacaa |
1092 |
Q |
| |
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||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||||| ||| |||| ||||||||||| ||||||||||| |
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| T |
8014009 |
tttttacggcgcatgatctgaggtaattgtgcacatgtgaataagaaaaatggaaaatgtaacaagataggggagaacgaatcaaatgtgggacaaacaa |
8013910 |
T |
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| Q |
1093 |
cgagaataattgtacaattcatttcaacacacacaatcaaacaattctattttcaaaattttagtctttcgtctttc |
1169 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8013909 |
cgagaagaatcgtacaattcatttcaacacacacaatcaaacaattctattttcaaaattttagtctttcatctttc |
8013833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 7e-77
Query Start/End: Original strand, 418 - 650
Target Start/End: Complemental strand, 8014600 - 8014375
Alignment:
| Q |
418 |
atttcttccccattaaataatccacccttctttgtcaaagaataaaataaaataatccacccttcttgatttttggcattgaacacacacccttcgagtc |
517 |
Q |
| |
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||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
8014600 |
atttcttcccctttaaataatcccctcttctttgtcaaaaaataaaataaaataatccacctttcttgatttttggcattgaacacacacccttcaagtc |
8014501 |
T |
|
| Q |
518 |
ctgttttgttatgagctggtcaaacgtgggtgaattttacactatagttatacttataccctcctccatctggtcccatgtataaacaaaatgtttggag |
617 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
8014500 |
ctgttttgtcatgagctggtcaaacgtgggtgaattttacactatagt-----ttata-cctc--ccatctggtcccatgtataaacaaaatgtttggag |
8014409 |
T |
|
| Q |
618 |
tttttaaatttc-aattataagaaaatgttaaac |
650 |
Q |
| |
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||||| ||| || ||||||||||||||| ||||| |
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| T |
8014408 |
ttttttaatctcaaattataagaaaatgctaaac |
8014375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 8015769 - 8015704
Alignment:
| Q |
357 |
aataaatagataattaacattatattttcctt-agaaaaacattagatttctgtttacatggattt |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||| |
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| T |
8015769 |
aataaatagataattaacattatattttccttaaaaaaaacattagatttccgtttacatgaattt |
8015704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 5e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 63 - 337
Target Start/End: Original strand, 40900453 - 40900743
Alignment:
| Q |
63 |
ttagtcatggttgtatgaattaacctccccttgaaatatttccaaattgatggctagcgtttttaatggcagtaacaacagtggttcatgatagaattgg |
162 |
Q |
| |
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||||||| ||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |
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| T |
40900453 |
ttagtcaatgttgtatgaatgaacctccctttgcaatatttcccaattgatggctagcgtttttaatgacagtaacaaaagtggttcttgatagaattgg |
40900552 |
T |
|
| Q |
163 |
a----------acccaccatgaactacgttgagaaccaccacaaaaaactaacagcagc------accaccacagaccccacagagaaccatcacaaacc |
246 |
Q |
| |
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| | ||||||||||||||| ||||||||||||||||||||| || || | ||||||||| | ||||| || |||||||| ||||| |
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| T |
40900553 |
aatccaccacgaaccaccatgaactacgccgagaaccaccacaaaaaactagcaacaccaccacgaccaccacaaaacccactgaaaaccatcataaacc |
40900652 |
T |
|
| Q |
247 |
accgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac |
337 |
Q |
| |
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||| ||||||| ||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |
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| T |
40900653 |
accacaaaaacacagcaaactaacatcaccatgaatgtcaacgatggagaaaacaaccgctgagagaaaccggtggccgagtgatgcggac |
40900743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 174 - 337
Target Start/End: Original strand, 6706169 - 6706334
Alignment:
| Q |
174 |
aactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccaccgc-aaaaacgcagtaaactaaca |
271 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| |||| |||| | ||||| | || ||||||||||||||| | | |||||||||| ||||||||| |
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|
| T |
6706169 |
aactacgttgagaaccaccacaaaaagctagcagcatcaccgccacaaaacccctccgaaaaccatcacaaaccatcacaaaaaacgcagcaaactaaca |
6706268 |
T |
|
| Q |
272 |
tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac |
337 |
Q |
| |
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||||||||| | ||||||| ||||| | ||||||||||| |||||| |||| ||||||||| |
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| T |
6706269 |
ccaccatgaacacgggcgatggagaaaacaattgctgagagaaaccggtggccgagtgatgcggac |
6706334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 21590407 - 21590285
Alignment:
| Q |
71 |
ggttgtatgaattaacctccccttgaaatatttccaaattgatggctagcgtttttaatggcagtaacaacagtggttcatgatagaattggaacccacc |
170 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21590407 |
ggttgtatgaattaaccgccccttgcaatacttcctaattgatggctagagtttttaatggcagtaacaacagtggttcatgatagaattggaacccacc |
21590308 |
T |
|
| Q |
171 |
atgaactacgttgagaaccacca |
193 |
Q |
| |
|
|||||||| | ||||||||||| |
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|
| T |
21590307 |
atgaactatgccgagaaccacca |
21590285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 21590285 - 21590207
Alignment:
| Q |
233 |
aaccatcacaaaccaccgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgaga |
311 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||||||| ||||||||| || || |||||| ||||| |||||||||| |
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|
| T |
21590285 |
aaccatcacaaatcaccacaaaaacgcagcaaactaacaccaccatgaacgctaaagatggagaaaacaaccgctgaga |
21590207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 174 - 337
Target Start/End: Original strand, 40681561 - 40681726
Alignment:
| Q |
174 |
aactacgttgagaaccaccacaaaaaactaacagcagcaccaccacaga-ccccacagagaaccatcacaaaccaccgcaaaaa-cgcagtaaactaaca |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| | | |||| | || ||||||||||||||||| |||||| ||||| ||||||||| |
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|
| T |
40681561 |
aactacgttgagaaccaccacaaaaaactagcagcaccaccaccataaaacccctccgaaaaccatcacaaaccaccacaaaaaacgcagcaaactaaca |
40681660 |
T |
|
| Q |
272 |
tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac |
337 |
Q |
| |
|
||||||||| || | ||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |
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|
| T |
40681661 |
ccaccatgaacgcgagcgatggataaaacaaccgctgagagaaaccggtggccgagtgatgcggac |
40681726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 40681095 - 40681124
Alignment:
| Q |
10 |
acatcatcaccacaaacaaaactcatcgcc |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40681095 |
acatcatcaccacaaacaaaactcatcgcc |
40681124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 174 - 337
Target Start/End: Original strand, 15496561 - 15496726
Alignment:
| Q |
174 |
aactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccacc-gcaaaaacgcagtaaactaaca |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||||||| | | ||| | || ||||||||||||||||| ||||||| || ||||||||| |
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|
| T |
15496561 |
aactacgttgagaaccaccacaaaaaactagcagtaccaccaccacaaaatccctccgaaaaccatcacaaaccaccaaaaaaaacgtagcaaactaaca |
15496660 |
T |
|
| Q |
272 |
tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac |
337 |
Q |
| |
|
||||||||| || | ||||||| ||||| ||| |||||||||| | |||| |||| ||||||||| |
|
|
| T |
15496661 |
ccaccatgaacgcgagcgatggagaaaacaaccactgagagaaaccagtggccgagtgatgcggac |
15496726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 163 - 337
Target Start/End: Original strand, 23581 - 23752
Alignment:
| Q |
163 |
aacccaccatgaactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccaccgcaaaaacgcag |
261 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||| ||||| ||||||||| | ||||| | || ||| ||||||||||||| ||||||||| |
|
|
| T |
23581 |
aacccaccatgaactatgccgagaagcaccacaaaaaactagcagcaccaccaccacaaaacccctccgaaaacaatcacaaaccaccacaaaaacgc-- |
23678 |
T |
|
| Q |
262 |
taaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac |
337 |
Q |
| |
|
|||||| | ||| ||||| ||||| |||||| ||||| ||| |||||||||| |||||| |||| |||||||| |
|
|
| T |
23679 |
--aactaaaaccacaatgaacgccaatgatggagaaaacaaccactgagagaaaccggtggccgagtaatgcggac |
23752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 2239220 - 2239323
Alignment:
| Q |
233 |
aaccatcacaaaccaccgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatg |
332 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||||| ||||||||| | || ||| || ||||| |||||||||||||| || ||| |||| |||| |
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|
| T |
2239220 |
aaccatcacaaaccaccacaaaaatacagcaaactaacaccaccatgaacgttaatgattgataaaacaaccgctgagagaaaccgatggccgagtgatg |
2239319 |
T |
|
| Q |
333 |
cgga |
336 |
Q |
| |
|
|||| |
|
|
| T |
2239320 |
cgga |
2239323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 22335313 - 22335259
Alignment:
| Q |
166 |
ccaccatgaactacgttgagaaccaccacaaaaaactaacagcagcaccaccaca |
220 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
22335313 |
ccaccatgaactaccccaagaaccaccacaaaaaactagcaccagcaccaccaca |
22335259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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