View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_high_10 (Length: 349)
Name: NF18707_high_10
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 35622224 - 35621893
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622224 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtcgagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
35622125 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622124 |
tgttgatgatgataacattaacctagcttcaagtttaccaaaaccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
35622025 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622024 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatt |
35621925 |
T |
|
| Q |
301 |
tagggttcaacatttatttggctgtagttttt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
35621924 |
tagggttcaacatttatttggctgtagttttt |
35621893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 34263306 - 34262972
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| | |||| |||||| | ||||| |||| ||||||| |
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| T |
34263306 |
ttgcttatttcttcgttactgagtcgccaaggtggcttattatgcaaggtcgagagaaagaaattataaaaaggctcaaaagagttttatcaaaagaaag |
34263207 |
T |
|
| Q |
101 |
tgttgatgatgat---aacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaa |
197 |
Q |
| |
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||||||||||||| |||| ||| |||| ||| ||||||||||| || ||| |||||||||| || |||||||| ||||||||||||||||||| || |
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| T |
34263206 |
tgttgatgatgatgataacactaatctaggttcgagtttaccaaaaccacccacaaaagaaaaggttacaatttttcaacattactcttcaataggtgaa |
34263107 |
T |
|
| Q |
198 |
ttgtttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaa |
297 |
Q |
| |
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||| ||||||||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
34263106 |
ttgattcataaaagatgggctcttataagaataatagctgttatgattcttggaattggaattggaatggtttatcttggtatgccactagcagttggaa |
34263007 |
T |
|
| Q |
298 |
atttagggttcaacatttatttggctgtagttttt |
332 |
Q |
| |
|
|||| || ||||| |||||||||||||| |||||| |
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| T |
34263006 |
atttgggattcaatatttatttggctgtggttttt |
34262972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 14580095 - 14579764
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| || |||||||| |
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| T |
14580095 |
ttgcttatctctttgttaccgagtcgcctaggtggcttgttatgcaaggtcgagagaaagaaattttgaaaatgctcaaaagggtttcttctgaagaaag |
14579996 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
| |
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|| |||||||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| |||| |
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| T |
14579995 |
tgccgatgatgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaatta |
14579896 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatt |
300 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14579895 |
tttcataaaagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttattttggtatgccactagctgttggaaatt |
14579796 |
T |
|
| Q |
301 |
tagggttcaacatttatttggctgtagttttt |
332 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||| |
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| T |
14579795 |
taggattcaacatttacttggctgtggttttt |
14579764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 14543492 - 14543823
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| || |||||||| |
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|
| T |
14543492 |
ttgcttatctctttgttaccgagtcgcctaggtggcttgttatgcaaggtcgagagaaagaaattttgaaaatgctcaaaagggtttcttctgaagaaag |
14543591 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
| |
|
|| |||||||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| |||| |
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| T |
14543592 |
tgccgatgatgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaatta |
14543691 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatt |
300 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14543692 |
tttcataaaagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttatttaggtatgccactagctgttggaaatt |
14543791 |
T |
|
| Q |
301 |
tagggttcaacatttatttggctgtagttttt |
332 |
Q |
| |
|
|||| ||||||||||| ||||| || |||||| |
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| T |
14543792 |
taggattcaacatttaattggcagtggttttt |
14543823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 10404724 - 10404808
Alignment:
| Q |
238 |
ttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttcaacatttatttggc |
322 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||| |||||||||||| || |||||||| ||||| ||| ||||||| ||||| |
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| T |
10404724 |
ttatggttcttggtatgggaattggaatggtttattttggtatgccactcgccgttggaaacttaggattcgacatttacttggc |
10404808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 10378725 - 10378825
Alignment:
| Q |
225 |
agaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttcaacatttatttggctg |
324 |
Q |
| |
|
|||||||| || || ||| ||||| ||||||||||||||||||| |||| ||| ||||| |||| |||||||| ||||| || ||||||||||||||| |
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| T |
10378725 |
agaatgatggcggtaatggttcttggtattggaattggaatggtctattttggaatgcctttagccgttggaaacttaggttttgacatttatttggctg |
10378824 |
T |
|
| Q |
325 |
t |
325 |
Q |
| |
|
| |
|
|
| T |
10378825 |
t |
10378825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 10404503 - 10404560
Alignment:
| Q |
5 |
ttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaa |
62 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||| | |||||||||||| | |||||| |
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|
| T |
10404503 |
ttatttctttgttaccgagtctccaagatggcttctaatgcaaggtagaaacaaagaa |
10404560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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