View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18707_high_12 (Length: 338)

Name: NF18707_high_12
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18707_high_12
NF18707_high_12
[»] chr2 (7 HSPs)
chr2 (8-320)||(7079463-7079775)
chr2 (280-320)||(11342063-11342103)
chr2 (278-317)||(8266408-8266447)
chr2 (278-320)||(19210823-19210865)
chr2 (278-320)||(42530497-42530539)
chr2 (278-319)||(3121427-3121468)
chr2 (278-319)||(23378036-23378077)
[»] chr3 (8 HSPs)
chr3 (278-317)||(10872768-10872807)
chr3 (278-317)||(12744906-12744945)
chr3 (279-319)||(24722693-24722733)
chr3 (278-317)||(9170117-9170156)
chr3 (279-314)||(29389333-29389368)
chr3 (279-317)||(22496957-22496995)
chr3 (278-320)||(34903677-34903719)
chr3 (278-316)||(52215885-52215923)
[»] chr4 (12 HSPs)
chr4 (279-317)||(53176404-53176442)
chr4 (278-319)||(41346472-41346513)
chr4 (278-317)||(3669561-3669600)
chr4 (278-317)||(23568476-23568515)
chr4 (278-317)||(38381981-38382020)
chr4 (278-317)||(52914094-52914133)
chr4 (278-317)||(54713103-54713142)
chr4 (278-320)||(54532846-54532888)
chr4 (284-317)||(40952444-40952477)
chr4 (278-319)||(48414873-48414914)
chr4 (284-320)||(21142183-21142219)
chr4 (281-317)||(48402507-48402543)
[»] chr5 (5 HSPs)
chr5 (283-320)||(30371426-30371463)
chr5 (278-317)||(71264-71303)
chr5 (282-317)||(26045274-26045309)
chr5 (278-320)||(1098720-1098762)
chr5 (278-320)||(33684136-33684178)
[»] chr1 (8 HSPs)
chr1 (280-317)||(34953992-34954029)
chr1 (278-313)||(3013615-3013650)
chr1 (278-317)||(23398424-23398463)
chr1 (278-317)||(38834616-38834655)
chr1 (278-317)||(46906866-46906905)
chr1 (278-320)||(3906854-3906896)
chr1 (278-320)||(18789842-18789884)
chr1 (280-317)||(46412710-46412747)
[»] scaffold0149 (1 HSPs)
scaffold0149 (278-317)||(24702-24741)
[»] chr8 (6 HSPs)
chr8 (278-317)||(10117066-10117105)
chr8 (278-317)||(41387858-41387897)
chr8 (278-320)||(10934608-10934650)
chr8 (278-320)||(18078010-18078052)
chr8 (278-320)||(28939422-28939464)
chr8 (278-319)||(36916677-36916718)
[»] chr7 (7 HSPs)
chr7 (278-317)||(2943308-2943347)
chr7 (278-317)||(5950290-5950329)
chr7 (278-317)||(21886472-21886511)
chr7 (280-317)||(6455556-6455593)
chr7 (278-319)||(34478329-34478370)
chr7 (284-320)||(9930399-9930435)
chr7 (278-318)||(37930793-37930833)
[»] chr6 (9 HSPs)
chr6 (278-317)||(8449672-8449711)
chr6 (278-317)||(8458476-8458515)
chr6 (278-320)||(6894819-6894861)
chr6 (279-317)||(18886314-18886352)
chr6 (278-319)||(18097065-18097106)
chr6 (278-319)||(28555041-28555082)
chr6 (278-319)||(29215537-29215578)
chr6 (284-317)||(31133207-31133240)
chr6 (280-320)||(6032973-6033013)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 7079775 - 7079463
Alignment:
Q  8 ccaagaatattttggggagtgtgaaaatgaaaacactgggctgggatgtgtgaaaatgaaatactgctgaattataaagtaaaaaggatgaagactactg 107  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7079775 ccaagaaaatgttggggagtgtgaaaatgaaaacactgggctgggatgtgtgaaaatgaaatactgctgaattataaagtaaaaaggatgaagactactg 7079676  T
Q  108 cgctgaggtctgataaagggttgggccttctttgaaaattatgctatataaatcccctttagaaaacgtattaatatatacacccccttattnnnnnnnc 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |    
T  7079675 cgctgatgtctgataaagggttgggccttctttgaaaattatgctatataaatcccctttaaaaaacgtattaatatatacacccccttattaaaaaaac 7079576  T
Q  208 tggacaccccatgggcatgggccctaggccaccgcatgcccgacttatgcattgggtcggctctgtcttgggtcactattataagcaaaaacttatattt 307  Q
    ||||||||||| || ||||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7079575 tggacaccccacggccatgggctctaggccaccgcacgtctgacttatgcattgggtcggctctgtcttgggtcactattataagcaaaaacatatattt 7079476  T
Q  308 tagattcatttaa 320  Q
    |||||||||||||    
T  7079475 tagattcatttaa 7079463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 11342103 - 11342063
Alignment:
Q  280 tcactattataagcaaaaacttatattttagattcatttaa 320  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  11342103 tcactattataagcaaaaatctatattttagattcatttaa 11342063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 8266447 - 8266408
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  8266447 ggtcactattataagcaaaaaattatattttaggttcatt 8266408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 19210823 - 19210865
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  19210823 ggtcactattataagcaaaaatttacattttaaattcatttaa 19210865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 42530497 - 42530539
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||    
T  42530497 ggtcactattataagtaaaaatttacattttagattcatttaa 42530539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 3121427 - 3121468
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    |||||||||||||||||||||   ||||||||||||||||||    
T  3121427 ggtcactattataagcaaaaatcaatattttagattcattta 3121468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 23378077 - 23378036
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    ||||| ||||||||||||||| | ||||||||||||||||||    
T  23378077 ggtcattattataagcaaaaattaatattttagattcattta 23378036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 10872807 - 10872768
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  10872807 ggtcactattataagcaaaaatttatattttagattcatt 10872768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 12744906 - 12744945
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  12744906 ggtcactattataagcaaaaacttacattttagattcatt 12744945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 24722693 - 24722733
Alignment:
Q  279 gtcactattataagcaaaaacttatattttagattcattta 319  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  24722693 gtcactattataagcaaaaattaatattttagattcattta 24722733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 9170117 - 9170156
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  9170117 ggtcactattataagcaaaaaattacattttagattcatt 9170156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 314
Target Start/End: Original strand, 29389333 - 29389368
Alignment:
Q  279 gtcactattataagcaaaaacttatattttagattc 314  Q
    |||||||||||||||||||| |||||||||||||||    
T  29389333 gtcactattataagcaaaaatttatattttagattc 29389368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 22496957 - 22496995
Alignment:
Q  279 gtcactattataagcaaaaacttatattttagattcatt 317  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  22496957 gtcactattataagcaaaaattaatattttagattcatt 22496995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 34903719 - 34903677
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  34903719 ggtcactattataagcaaaaatttacattttaaattcatttaa 34903677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 52215885 - 52215923
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcat 316  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  52215885 ggtcactattataagcaaaaatttacattttagattcat 52215923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 53176442 - 53176404
Alignment:
Q  279 gtcactattataagcaaaaacttatattttagattcatt 317  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  53176442 gtcactattataagcaaaaatttatattttagattcatt 53176404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 41346472 - 41346513
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  41346472 ggtcactattataagtaaaaatttatattttagattcattta 41346513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 3669561 - 3669600
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  3669561 ggtcactattataagcaaatatttatattttagattcatt 3669600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 23568515 - 23568476
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  23568515 ggtcactattataagcaaaaactaacattttagattcatt 23568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 38381981 - 38382020
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  38381981 ggtcactattataagcaaaaatttacattttagattcatt 38382020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 52914133 - 52914094
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  52914133 ggtcactattataagcaaaaattaatattttagattcatt 52914094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 54713103 - 54713142
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  54713103 ggtcactattataagcaaaaatttacattttagattcatt 54713142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 54532888 - 54532846
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  54532888 ggtcactattataagcaaaaatttacattttaaattcatttaa 54532846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 40952477 - 40952444
Alignment:
Q  284 tattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||| ||||||||||||||||||    
T  40952477 tattataagcaaaaatttatattttagattcatt 40952444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 48414873 - 48414914
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    |||||||| |||||||||||| ||||||||||| ||||||||    
T  48414873 ggtcactaatataagcaaaaatttatattttaggttcattta 48414914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 21142219 - 21142183
Alignment:
Q  284 tattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||  |||||||||||||||||||||    
T  21142219 tattataagcaaaagtttatattttagattcatttaa 21142183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 48402543 - 48402507
Alignment:
Q  281 cactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||  |||||||||||||||||    
T  48402543 cactattataagcaaaaatctatattttagattcatt 48402507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 30371463 - 30371426
Alignment:
Q  283 ctattataagcaaaaacttatattttagattcatttaa 320  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30371463 ctattataagcaaaaaattatattttagattcatttaa 30371426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 71264 - 71303
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  71264 ggtcactattataagcaaaaatctatattttagattcatt 71303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 317
Target Start/End: Original strand, 26045274 - 26045309
Alignment:
Q  282 actattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26045274 actattataagcaaaaatttatattttagattcatt 26045309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 1098762 - 1098720
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||||||||  |||| ||||||||||||||||    
T  1098762 ggtcactattataagcaaaagtttattttttagattcatttaa 1098720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 33684178 - 33684136
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  33684178 ggtcactattataagcaaaaatttacattttaaattcatttaa 33684136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 34954029 - 34953992
Alignment:
Q  280 tcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  34954029 tcactattataagcaaaaatttatattttagattcatt 34953992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 3013615 - 3013650
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagatt 313  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3013615 ggtcactattataagcaaaaaattatattttagatt 3013650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 23398424 - 23398463
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  23398424 ggtcactattataagcaaaaactaacattttagattcatt 23398463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 38834616 - 38834655
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  38834616 ggtcactattataagcaaaaatttattttttagattcatt 38834655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 46906866 - 46906905
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  46906866 ggtcactattataagcaaaaatctatattttagattcatt 46906905  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 3906896 - 3906854
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    |||||||||||||| |||||| |||| ||||||||||||||||    
T  3906896 ggtcactattataaacaaaaatttattttttagattcatttaa 3906854  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 18789842 - 18789884
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  18789842 ggtcactattataagcaaaaatttacattttaaattcatttaa 18789884  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 46412710 - 46412747
Alignment:
Q  280 tcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  46412710 tcactattataagcaaaaattaatattttagattcatt 46412747  T

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Target: scaffold0149 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 24741 - 24702
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  24741 ggtcactattataagcaaaaattaatattttagattcatt 24702  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 10117105 - 10117066
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  10117105 ggtcactattataagcaaaaatttacattttagattcatt 10117066  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 41387897 - 41387858
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  41387897 ggtcactattataagcaaaaaactatattttagattcatt 41387858  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 10934608 - 10934650
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    |||||||||||||||||||||  ||||||||| ||||||||||    
T  10934608 ggtcactattataagcaaaaaactatattttacattcatttaa 10934650  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 18078052 - 18078010
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  18078052 ggtcactattataagcaaaaatttaaattttaaattcatttaa 18078010  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 28939422 - 28939464
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  28939422 ggtcactattataagcaaaaatttacattttaaattcatttaa 28939464  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 36916718 - 36916677
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    ||||||||||||||||||||  |||||||||||||| |||||    
T  36916718 ggtcactattataagcaaaattttatattttagatttattta 36916677  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 2943347 - 2943308
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  2943347 ggtcactattataagcaaaaaattatattttacattcatt 2943308  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 5950329 - 5950290
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  5950329 ggtcactattataagcaaaaactaacattttagattcatt 5950290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 21886472 - 21886511
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  21886472 ggtcattattataagcaaaaatttatattttagattcatt 21886511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 6455556 - 6455593
Alignment:
Q  280 tcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  6455556 tcactattataagcaaaaatttacattttagattcatt 6455593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 34478370 - 34478329
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    ||||||||||||||||||||| | || |||||||||||||||    
T  34478370 ggtcactattataagcaaaaattaattttttagattcattta 34478329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 9930399 - 9930435
Alignment:
Q  284 tattataagcaaaaacttatattttagattcatttaa 320  Q
    |||||||| |||||| |||||||||||||||||||||    
T  9930399 tattataaacaaaaatttatattttagattcatttaa 9930435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 37930833 - 37930793
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattt 318  Q
    |||||||||||||| |||||| | |||||||||||||||||    
T  37930833 ggtcactattataaacaaaaattaatattttagattcattt 37930793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 8449711 - 8449672
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  8449711 ggtcactattataagcaaaaattaatattttagattcatt 8449672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 8458515 - 8458476
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  8458515 ggtcactattataagcaaaaattaatattttagattcatt 8458476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 6894819 - 6894861
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcatttaa 320  Q
    |||||||||||||| |||||| ||| |||||||||||||||||    
T  6894819 ggtcactattataaacaaaaatttacattttagattcatttaa 6894861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 18886314 - 18886352
Alignment:
Q  279 gtcactattataagcaaaaacttatattttagattcatt 317  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  18886314 gtcactattataagcaaaaattaatattttagattcatt 18886352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 18097065 - 18097106
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    ||||||||||||||||||||  ||| ||||||||||||||||    
T  18097065 ggtcactattataagcaaaagtttacattttagattcattta 18097106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 28555082 - 28555041
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    |||||||||||||||||||||  || ||||||||||||||||    
T  28555082 ggtcactattataagcaaaaatctacattttagattcattta 28555041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 29215578 - 29215537
Alignment:
Q  278 ggtcactattataagcaaaaacttatattttagattcattta 319  Q
    ||||||||||||||||||||  || |||||||||||||||||    
T  29215578 ggtcactattataagcaaaattttgtattttagattcattta 29215537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 31133240 - 31133207
Alignment:
Q  284 tattataagcaaaaacttatattttagattcatt 317  Q
    ||||||||||||||||| ||||||||||||||||    
T  31133240 tattataagcaaaaactaatattttagattcatt 31133207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 6032973 - 6033013
Alignment:
Q  280 tcactattataagcaaaaacttatattttagattcatttaa 320  Q
    ||||||||||||| ||||| | |||||||||||||||||||    
T  6032973 tcactattataagtaaaaattgatattttagattcatttaa 6033013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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