View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_high_13 (Length: 336)
Name: NF18707_high_13
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 30342385 - 30342692
Alignment:
| Q |
16 |
tgtccaactctagttgagaaagtgattctaccactcaaattgttgttctccaaattgatctcattagcaaattccaaaagcccaaattccttaggaacag |
115 |
Q |
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| T |
30342385 |
tgtccaactctagttgagaaagtgattctaccactcaaattgttgttctccaaattgatctcattagcaaattccaaaagcccaaattccttaggaacag |
30342484 |
T |
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| Q |
116 |
acccatcaagcttattgttatcaagtccaagataagataaattcttcaaataaacccccattgaaactggaattttaccaaccaaccccattttagaaaa |
215 |
Q |
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| T |
30342485 |
acccatcaagcttattgttatcaagtccaagataagataaattcttcaaataaacccccattgaaactggaattttaccaaccaaccccattttagaaaa |
30342584 |
T |
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| Q |
216 |
tccaattttttcaacagcaccaagatttttccatatttctggaattttaccagaaagtaaattcccacttaaataaacttctttcaatccggggatttct |
315 |
Q |
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| T |
30342585 |
tccaattttttcaacagcaccaagatttttccatatttctggaattttaccagaaagtaaattcccacttaaataaacttctttcaatccggggatttct |
30342684 |
T |
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| Q |
316 |
cctaagaa |
323 |
Q |
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|||||||| |
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| T |
30342685 |
cctaagaa |
30342692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 30333427 - 30333362
Alignment:
| Q |
16 |
tgtccaactctagttgagaaagtgattctaccactcaaattgttgttctccaaattgatctcatta |
81 |
Q |
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||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30333427 |
tgtccaactctggctgagaaagtgattataccactcaaattgttgttctccaaattgatctcatta |
30333362 |
T |
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