View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18707_high_2 (Length: 742)

Name: NF18707_high_2
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18707_high_2
NF18707_high_2
[»] chr2 (4 HSPs)
chr2 (63-337)||(40900453-40900743)
chr2 (406-680)||(40900453-40900743)
chr2 (174-337)||(6706169-6706334)
chr2 (406-569)||(6706169-6706334)
[»] chr7 (4 HSPs)
chr7 (550-672)||(21590285-21590407)
chr7 (71-193)||(21590285-21590407)
chr7 (432-510)||(21590207-21590285)
chr7 (233-311)||(21590207-21590285)
[»] chr5 (4 HSPs)
chr5 (174-337)||(40681561-40681726)
chr5 (406-569)||(40681561-40681726)
chr5 (10-39)||(40681095-40681124)
chr5 (704-733)||(40681095-40681124)
[»] chr1 (2 HSPs)
chr1 (174-337)||(15496561-15496726)
chr1 (406-569)||(15496561-15496726)
[»] scaffold0092 (2 HSPs)
scaffold0092 (163-337)||(23581-23752)
scaffold0092 (406-580)||(23581-23752)
[»] chr6 (2 HSPs)
chr6 (233-336)||(2239220-2239323)
chr6 (407-510)||(2239220-2239323)
[»] chr4 (2 HSPs)
chr4 (523-577)||(22335259-22335313)
chr4 (166-220)||(22335259-22335313)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 63 - 337
Target Start/End: Original strand, 40900453 - 40900743
Alignment:
Q  63 ttagtcatggttgtatgaattaacctccccttgaaatatttccaaattgatggctagcgtttttaatggcagtaacaacagtggttcatgatagaattgg 162  Q
    |||||||  ||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  40900453 ttagtcaatgttgtatgaatgaacctccctttgcaatatttcccaattgatggctagcgtttttaatgacagtaacaaaagtggttcttgatagaattgg 40900552  T
Q  163 a----------acccaccatgaactacgttgagaaccaccacaaaaaactaacagcagc------accaccacagaccccacagagaaccatcacaaacc 246  Q
    |          | |||||||||||||||  ||||||||||||||||||||| || || |      ||||||||| | ||||| || |||||||| |||||    
T  40900553 aatccaccacgaaccaccatgaactacgccgagaaccaccacaaaaaactagcaacaccaccacgaccaccacaaaacccactgaaaaccatcataaacc 40900652  T
Q  247 accgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 337  Q
    ||| ||||||| ||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||| |||| |||||||||    
T  40900653 accacaaaaacacagcaaactaacatcaccatgaatgtcaacgatggagaaaacaaccgctgagagaaaccggtggccgagtgatgcggac 40900743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 406 - 680
Target Start/End: Complemental strand, 40900743 - 40900453
Alignment:
Q  406 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgcggtggtttgtga 505  Q
    ||||||||| |||| |||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||| ||||||| |||||||| |||    
T  40900743 gtccgcatcactcggccaccggtttctctcagcggttgttttctccatcgttgacattcatggtgatgttagtttgctgtgtttttgtggtggtttatga 40900644  T
Q  506 tggttctctgtggggtctgtggtggt------gctgctgttagttttttgtggtggttctcaacgtagttcatggtgggt----------tccaattcta 589  Q
    ||||| || ||||| | |||||||||      | || || |||||||||||||||||||||  ||||||||||||||| |          ||||||||||    
T  40900643 tggttttcagtgggttttgtggtggtcgtggtggtgttgctagttttttgtggtggttctcggcgtagttcatggtggttcgtggtggattccaattcta 40900544  T
Q  590 tcatgaaccactgttgttactgccattaaaaacgctagccatcaatttggaaatatttcaaggggaggttaattcatacaaccatgactaa 680  Q
    ||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||  |||||||    
T  40900543 tcaagaaccacttttgttactgtcattaaaaacgctagccatcaattgggaaatattgcaaagggaggttcattcatacaacattgactaa 40900453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 174 - 337
Target Start/End: Original strand, 6706169 - 6706334
Alignment:
Q  174 aactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccaccgc-aaaaacgcagtaaactaaca 271  Q
    |||||||||||||||||||||||||| ||| ||||| |||| |||| | ||||| | || ||||||||||||||| | | |||||||||| |||||||||    
T  6706169 aactacgttgagaaccaccacaaaaagctagcagcatcaccgccacaaaacccctccgaaaaccatcacaaaccatcacaaaaaacgcagcaaactaaca 6706268  T
Q  272 tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 337  Q
     |||||||||  |   ||||||| ||||| |  ||||||||||| |||||| |||| |||||||||    
T  6706269 ccaccatgaacacgggcgatggagaaaacaattgctgagagaaaccggtggccgagtgatgcggac 6706334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 406 - 569
Target Start/End: Complemental strand, 6706334 - 6706169
Alignment:
Q  406 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgttttt-gcggtggtttgtg 504  Q
    ||||||||| |||| |||||| |||||||||||  | ||||| |||||||   |  ||||||||| ||||||||| |||||||||| | | |||||||||    
T  6706334 gtccgcatcactcggccaccggtttctctcagcaattgttttctccatcgcccgtgttcatggtggtgttagtttgctgcgttttttgtgatggtttgtg 6706235  T
Q  505 atggttctctgtggggtct-gtggtggtgctgctgttagttttttgtggtggttctcaacgtagtt 569  Q
    |||||| || | ||||| | |||| |||| ||||| ||| ||||||||||||||||||||||||||    
T  6706234 atggttttcggaggggttttgtggcggtgatgctgctagctttttgtggtggttctcaacgtagtt 6706169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 550 - 672
Target Start/End: Original strand, 21590285 - 21590407
Alignment:
Q  550 tggtggttctcaacgtagttcatggtgggttccaattctatcatgaaccactgttgttactgccattaaaaacgctagccatcaatttggaaatatttca 649  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||    
T  21590285 tggtggttctcggcatagttcatggtgggttccaattctatcatgaaccactgttgttactgccattaaaaactctagccatcaattaggaagtattgca 21590384  T
Q  650 aggggaggttaattcatacaacc 672  Q
    ||||| |||||||||||||||||    
T  21590385 aggggcggttaattcatacaacc 21590407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 21590407 - 21590285
Alignment:
Q  71 ggttgtatgaattaacctccccttgaaatatttccaaattgatggctagcgtttttaatggcagtaacaacagtggttcatgatagaattggaacccacc 170  Q
    ||||||||||||||||| ||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21590407 ggttgtatgaattaaccgccccttgcaatacttcctaattgatggctagagtttttaatggcagtaacaacagtggttcatgatagaattggaacccacc 21590308  T
Q  171 atgaactacgttgagaaccacca 193  Q
    |||||||| |  |||||||||||    
T  21590307 atgaactatgccgagaaccacca 21590285  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 432 - 510
Target Start/End: Original strand, 21590207 - 21590285
Alignment:
Q  432 tctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgcggtggtttgtgatggtt 510  Q
    |||||||||| ||||| |||||| || || ||||||||| ||||||||| ||||||||||| |||| ||||||||||||    
T  21590207 tctcagcggttgttttctccatctttagcgttcatggtggtgttagtttgctgcgtttttgtggtgatttgtgatggtt 21590285  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 21590285 - 21590207
Alignment:
Q  233 aaccatcacaaaccaccgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgaga 311  Q
    |||||||||||| |||| ||||||||||| ||||||||| ||||||||| || || |||||| ||||| ||||||||||    
T  21590285 aaccatcacaaatcaccacaaaaacgcagcaaactaacaccaccatgaacgctaaagatggagaaaacaaccgctgaga 21590207  T

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Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 174 - 337
Target Start/End: Original strand, 40681561 - 40681726
Alignment:
Q  174 aactacgttgagaaccaccacaaaaaactaacagcagcaccaccacaga-ccccacagagaaccatcacaaaccaccgcaaaaa-cgcagtaaactaaca 271  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| | | |||| | || ||||||||||||||||| |||||| ||||| |||||||||    
T  40681561 aactacgttgagaaccaccacaaaaaactagcagcaccaccaccataaaacccctccgaaaaccatcacaaaccaccacaaaaaacgcagcaaactaaca 40681660  T
Q  272 tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 337  Q
     ||||||||| || | ||||||| ||||| |||||||||||||| |||||| |||| |||||||||    
T  40681661 ccaccatgaacgcgagcgatggataaaacaaccgctgagagaaaccggtggccgagtgatgcggac 40681726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 406 - 569
Target Start/End: Complemental strand, 40681726 - 40681561
Alignment:
Q  406 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcg-tttttgcggtggtttgtg 504  Q
    ||||||||| |||| |||||| |||||||||||||| ||||| ||||||| | || ||||||||| ||||||||| ||||| |||||| |||||||||||    
T  40681726 gtccgcatcactcggccaccggtttctctcagcggttgttttatccatcgctcgcgttcatggtggtgttagtttgctgcgttttttgtggtggtttgtg 40681627  T
Q  505 atggttctctgtgggg-tctgtggtggtgctgctgttagttttttgtggtggttctcaacgtagtt 569  Q
    |||||| || | |||| | | |||||||| ||||| ||||||||||||||||||||||||||||||    
T  40681626 atggttttcggaggggttttatggtggtggtgctgctagttttttgtggtggttctcaacgtagtt 40681561  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 40681095 - 40681124
Alignment:
Q  10 acatcatcaccacaaacaaaactcatcgcc 39  Q
    ||||||||||||||||||||||||||||||    
T  40681095 acatcatcaccacaaacaaaactcatcgcc 40681124  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 733
Target Start/End: Complemental strand, 40681124 - 40681095
Alignment:
Q  704 ggcgatgagttttgtttgtggtgatgatgt 733  Q
    ||||||||||||||||||||||||||||||    
T  40681124 ggcgatgagttttgtttgtggtgatgatgt 40681095  T

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Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 174 - 337
Target Start/End: Original strand, 15496561 - 15496726
Alignment:
Q  174 aactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccacc-gcaaaaacgcagtaaactaaca 271  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||| | | ||| | || |||||||||||||||||   ||||||| || |||||||||    
T  15496561 aactacgttgagaaccaccacaaaaaactagcagtaccaccaccacaaaatccctccgaaaaccatcacaaaccaccaaaaaaaacgtagcaaactaaca 15496660  T
Q  272 tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 337  Q
     ||||||||| || | ||||||| ||||| ||| |||||||||| | |||| |||| |||||||||    
T  15496661 ccaccatgaacgcgagcgatggagaaaacaaccactgagagaaaccagtggccgagtgatgcggac 15496726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 406 - 569
Target Start/End: Complemental strand, 15496726 - 15496561
Alignment:
Q  406 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgc-ggtggtttgtg 504  Q
    ||||||||| |||| |||| | |||||||||| ||| ||||| ||||||| | || ||||||||| ||||||||| || |||||||   |||||||||||    
T  15496726 gtccgcatcactcggccactggtttctctcagtggttgttttctccatcgctcgcgttcatggtggtgttagtttgctacgttttttttggtggtttgtg 15496627  T
Q  505 atggttctctgtggggtct-gtggtggtgctgctgttagttttttgtggtggttctcaacgtagtt 569  Q
    |||||| || | ||| | | ||||||||| | ||| ||||||||||||||||||||||||||||||    
T  15496626 atggttttcggagggattttgtggtggtggtactgctagttttttgtggtggttctcaacgtagtt 15496561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 163 - 337
Target Start/End: Original strand, 23581 - 23752
Alignment:
Q  163 aacccaccatgaactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccaccgcaaaaacgcag 261  Q
    |||||||||||||||| |  ||||| ||||||||||||||| ||||| ||||||||| | ||||| | || ||| ||||||||||||| |||||||||      
T  23581 aacccaccatgaactatgccgagaagcaccacaaaaaactagcagcaccaccaccacaaaacccctccgaaaacaatcacaaaccaccacaaaaacgc-- 23678  T
Q  262 taaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 337  Q
      |||||| | ||| ||||| ||||| |||||| ||||| ||| |||||||||| |||||| ||||  ||||||||    
T  23679 --aactaaaaccacaatgaacgccaatgatggagaaaacaaccactgagagaaaccggtggccgagtaatgcggac 23752  T

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Target: scaffold0092; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 406 - 580
Target Start/End: Complemental strand, 23752 - 23581
Alignment:
Q  406 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgcggtggtttgtga 505  Q
    ||||||||  |||| |||||| |||||||||| ||| ||||| |||||| ||||| ||||| ||| | ||||||    ||||||||| ||||||||||||    
T  23752 gtccgcattactcggccaccggtttctctcagtggttgttttctccatcattggcgttcattgtggttttagtt----gcgtttttgtggtggtttgtga 23657  T
Q  506 tggttctctgtggggtct-gtggtggtgctgctgttagttttttgtggtggttctcaacgtagttcatggtgggtt 580  Q
    | ||| || | ||||| | ||||||||| ||||| ||||||||||||||| |||||  | ||||||||||||||||    
T  23656 ttgttttcggaggggttttgtggtggtggtgctgctagttttttgtggtgcttctcggcatagttcatggtgggtt 23581  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 2239220 - 2239323
Alignment:
Q  233 aaccatcacaaaccaccgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatg 332  Q
    ||||||||||||||||| ||||||  ||| ||||||||| ||||||||| |  || ||| || ||||| |||||||||||||| || ||| |||| ||||    
T  2239220 aaccatcacaaaccaccacaaaaatacagcaaactaacaccaccatgaacgttaatgattgataaaacaaccgctgagagaaaccgatggccgagtgatg 2239319  T
Q  333 cgga 336  Q
    ||||    
T  2239320 cgga 2239323  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 510
Target Start/End: Complemental strand, 2239323 - 2239220
Alignment:
Q  407 tccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgcggtggtttgtgat 506  Q
    |||||||| |||| ||| || |||||||||||||| ||||| || ||| ||  | ||||||||| ||||||||| |||  |||||| |||||||||||||    
T  2239323 tccgcatcactcggccatcggtttctctcagcggttgttttatcaatcattaacgttcatggtggtgttagtttgctgtatttttgtggtggtttgtgat 2239224  T
Q  507 ggtt 510  Q
    ||||    
T  2239223 ggtt 2239220  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 577
Target Start/End: Original strand, 22335259 - 22335313
Alignment:
Q  523 tgtggtggtgctgctgttagttttttgtggtggttctcaacgtagttcatggtgg 577  Q
    ||||||||||||| || ||||||||||||||||||||    ||||||||||||||    
T  22335259 tgtggtggtgctggtgctagttttttgtggtggttcttggggtagttcatggtgg 22335313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 22335313 - 22335259
Alignment:
Q  166 ccaccatgaactacgttgagaaccaccacaaaaaactaacagcagcaccaccaca 220  Q
    ||||||||||||||    |||||||||||||||||||| || |||||||||||||    
T  22335313 ccaccatgaactaccccaagaaccaccacaaaaaactagcaccagcaccaccaca 22335259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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