View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_high_20 (Length: 271)
Name: NF18707_high_20
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 53208005 - 53208246
Alignment:
| Q |
18 |
gtttgtttatagctatgtgtacaattgggaatcattagtgatattgtactaattaattatctctattattgggttggcttttcaacaaagaattttctat |
117 |
Q |
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| T |
53208005 |
gtttgtttatagctatgcgtacaattgggaatcattagtgatattgtactaattaattatctctattattgggttggcttttcaacaaagaattttctat |
53208104 |
T |
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| Q |
118 |
tagttatcatcgttcaccaacaactattataatcttggtggtccttgaccttgtttcactcatagtttttgggtggtccttcttgttatcaattgtgaca |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53208105 |
tagtggtcatcgttcaccaacaactattataatcttggtggtccttgaccttgtttcactcatagtttttgggtggtccttcttgttatcaattgtgaca |
53208204 |
T |
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| Q |
218 |
cgaatataaatatatcattgcattccttattgtttaaataat |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
53208205 |
cgaatataaatatatcattgcattccttattgtttaaataat |
53208246 |
T |
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