View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_high_23 (Length: 255)
Name: NF18707_high_23
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36341923 - 36342161
Alignment:
| Q |
1 |
ggaaacaaagaggaagcatgcgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatat |
100 |
Q |
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| T |
36341923 |
ggaaacaaagaggaagcatgtgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatat |
36342022 |
T |
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| Q |
101 |
tctcaattcaaattcaaatattactaaccgaaaatctatagaaaaattgcatcag-------tgatgagcaattgaattctctaattgaaagttaaatat |
193 |
Q |
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| T |
36342023 |
tctcaattcaaattcaaatattgctaactgaaaatctatagaaaaactgcatcagtgatgactgatgagcaattgaattctctaattcaaagttaaatat |
36342122 |
T |
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| Q |
194 |
tgttagacgaatatctgcacaataattgcagcaatcagt |
232 |
Q |
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| T |
36342123 |
tgttagatgaatatctgcacaataattgcagcaatcagt |
36342161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 39865270 - 39865468
Alignment:
| Q |
34 |
tatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatattactaaccgaaa |
133 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
39865270 |
tatatacaggttacaacaataacttggctgatcgcaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatatcgctaactgaaa |
39865369 |
T |
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| Q |
134 |
atctatagaaaaattgcatcagtgatgagcaattgaattctctaattgaaagttaaatattgttagacgaatatctgcacaataattgcagcaatcagt |
232 |
Q |
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| T |
39865370 |
atctatacaataactgcatcagtaaccggcaattgaattatctaattcaaagacaaattctgttagatgaatatctgcacaataattgcagaaatcagt |
39865468 |
T |
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