View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18707_high_27 (Length: 249)

Name: NF18707_high_27
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18707_high_27
NF18707_high_27
[»] chr5 (6 HSPs)
chr5 (16-90)||(36080925-36080999)
chr5 (94-146)||(36080752-36080804)
chr5 (94-137)||(32270282-32270325)
chr5 (94-142)||(5841506-5841554)
chr5 (94-142)||(35286197-35286245)
chr5 (94-142)||(36977596-36977644)
[»] chr8 (2 HSPs)
chr8 (94-142)||(32821794-32821842)
chr8 (98-142)||(788563-788607)
[»] chr7 (3 HSPs)
chr7 (94-142)||(9157615-9157663)
chr7 (94-142)||(28336999-28337047)
chr7 (94-142)||(48268856-48268904)
[»] chr2 (1 HSPs)
chr2 (94-137)||(7634604-7634647)
[»] chr1 (4 HSPs)
chr1 (97-146)||(47792698-47792747)
chr1 (94-142)||(29152978-29153026)
chr1 (94-142)||(34331482-34331530)
chr1 (94-142)||(43413522-43413570)
[»] chr6 (2 HSPs)
chr6 (94-142)||(13193004-13193052)
chr6 (94-142)||(17186921-17186969)
[»] chr4 (1 HSPs)
chr4 (94-142)||(24968598-24968646)
[»] chr3 (1 HSPs)
chr3 (94-142)||(19680860-19680908)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 36080999 - 36080925
Alignment:
Q  16 atttataatgtaattattattttataatcactttgtatttctaaagaaatgggttttttagggctggtttgttat 90  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36080999 atttataatgtagttattattttataatcactttgtatttctaaagaaatggtttttttagggctggtttgttat 36080925  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 36080804 - 36080752
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatcaaata 146  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  36080804 ttcactaacttaaatattcattgtttgtgattttacttagtaaatctcaaata 36080752  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 32270282 - 32270325
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaa 137  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  32270282 ttcactaacttaaatattcattgttcgagattttacttagtaaa 32270325  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 5841554 - 5841506
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    |||||||||||||||||||||||||   |||||||| ||||||| ||||    
T  5841554 ttcactaacttaaatattcattgttcgagattttacatagtaaaaatca 5841506  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 35286245 - 35286197
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    ||||||||||||||||||||||||| | |||||||| | ||||| ||||    
T  35286245 ttcactaacttaaatattcattgttcaagattttacattgtaaaaatca 35286197  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 36977644 - 36977596
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    |||||||||||||||||||||||||   |||||||| ||||||| ||||    
T  36977644 ttcactaacttaaatattcattgttcgagattttacatagtaaaaatca 36977596  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 32821842 - 32821794
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    |||||||||||||||||||||||||   |||||||||||||||| ||||    
T  32821842 ttcactaacttaaatattcattgttcgagattttacttagtaaaaatca 32821794  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 788563 - 788607
Alignment:
Q  98 ctaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    ||||||||||||||||||||| |||||||||  ||||||| ||||    
T  788563 ctaacttaaatattcattgttcatgattttatatagtaaaaatca 788607  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 9157615 - 9157663
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    ||||||||||||||||||||||||||  |||||||| ||||||| ||||    
T  9157615 ttcactaacttaaatattcattgtttgagattttacatagtaaaaatca 9157663  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 28337047 - 28336999
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    ||||||||||||||||||||||||| | |||||||| ||||||| ||||    
T  28337047 ttcactaacttaaatattcattgttcaagattttacatagtaaaaatca 28336999  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 48268904 - 48268856
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    ||||||||||||||||||||||||||  |||||||| ||||||| ||||    
T  48268904 ttcactaacttaaatattcattgtttgagattttacatagtaaaaatca 48268856  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 7634604 - 7634647
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaa 137  Q
    ||||||||||||||||||||||||||  |||||||| |||||||    
T  7634604 ttcactaacttaaatattcattgtttgagattttacatagtaaa 7634647  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 47792747 - 47792698
Alignment:
Q  97 actaacttaaatattcattgtttatgattttacttagtaaatatcaaata 146  Q
    ||||||||||||||||||||||   |||||||| ||||||| ||||||||    
T  47792747 actaacttaaatattcattgttcgagattttacatagtaaaaatcaaata 47792698  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 29153026 - 29152978
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    |||||||||||| |||||||||||||  |||||||| ||||||| ||||    
T  29153026 ttcactaacttatatattcattgtttgagattttacatagtaaaaatca 29152978  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 34331482 - 34331530
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    |||||||||||||||||||||||||   |||||||| ||||||| ||||    
T  34331482 ttcactaacttaaatattcattgttagagattttacatagtaaaaatca 34331530  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 43413570 - 43413522
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    ||||||||||||||||||||||||||  ||||||||  |||||| ||||    
T  43413570 ttcactaacttaaatattcattgtttgagattttacacagtaaaaatca 43413522  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 13193052 - 13193004
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    ||||||| |||||||||||||||||   |||||||| ||||||||||||    
T  13193052 ttcactagcttaaatattcattgttcgagattttacgtagtaaatatca 13193004  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 17186969 - 17186921
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    |||||||||||||||||||||||||   |||||||| ||||||| ||||    
T  17186969 ttcactaacttaaatattcattgttcgagattttacatagtaaaaatca 17186921  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 24968598 - 24968646
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    |||||||||||||||||||||||||   |||||||| ||||||| ||||    
T  24968598 ttcactaacttaaatattcattgttcgagattttacatagtaaaaatca 24968646  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 19680908 - 19680860
Alignment:
Q  94 ttcactaacttaaatattcattgtttatgattttacttagtaaatatca 142  Q
    |||||||||||||||||||||||||   | |||||| ||||||||||||    
T  19680908 ttcactaacttaaatattcattgttcgagcttttacatagtaaatatca 19680860  T

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