View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_high_39 (Length: 217)
Name: NF18707_high_39
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_high_39 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7763460 - 7763339
Alignment:
| Q |
1 |
ataacctatttcctgagcagaatccgaagaattgggctnnnnnnntccaggaagagtggaggattttggagaagcattttccgggtgagtttagtattct |
100 |
Q |
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| T |
7763460 |
ataacctatttcctgagcagaatccaaagaattgggctaaaaaaatccaggaagagtggaggattttggagaagcatttgccgggtgagtctagtattct |
7763361 |
T |
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| Q |
101 |
tgatacgaaatatcttgtacta |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
7763360 |
tgatacgaaatatcttgtacta |
7763339 |
T |
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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 33363199 - 33363314
Alignment:
| Q |
4 |
acctatttcctgagcagaatccgaagaattgggctnnnnnnntccaggaagagtggaggattttggagaagcattttccgggtgagtttagtattcttga |
103 |
Q |
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| T |
33363199 |
acctatttcctaagcagaatccgaagagttgggctaaaaaaatccaggaagagtggaggattttggaggagcatttgccgggtgagtttagtattcctga |
33363298 |
T |
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| Q |
104 |
tacgaaatatcttgta |
119 |
Q |
| |
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||| ||||| |||||| |
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| T |
33363299 |
tactaaatagcttgta |
33363314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 33369630 - 33369745
Alignment:
| Q |
4 |
acctatttcctgagcagaatccgaagaattgggctnnnnnnntccaggaagagtggaggattttggagaagcattttccgggtgagtttagtattcttga |
103 |
Q |
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| T |
33369630 |
acctatttcctgatcagaatccaaagagttgggctaaaaaaatccaggaagagtggaagattttggaggagcattttccgggcgagtttagtattcttgt |
33369729 |
T |
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| Q |
104 |
tacgaaatatcttgta |
119 |
Q |
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| | ||||| |||||| |
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| T |
33369730 |
tgctaaatagcttgta |
33369745 |
T |
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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 41441976 - 41442049
Alignment:
| Q |
46 |
tccaggaagagtggaggattttggagaagcattttccgggtgagtttagtattcttgatacgaaatatcttgta |
119 |
Q |
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| T |
41441976 |
tccaggaagagtggaggattctggagaagcatttgccgggtgagtttagtattcgtgacacaaaatagcttgta |
41442049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 41425998 - 41426059
Alignment:
| Q |
50 |
ggaagagtggaggattttggagaagcattttccgggtgagtttagtattcttgatacgaaat |
111 |
Q |
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| T |
41425998 |
ggaagagtggaagattttggagaagcacttgccgggtgagtttagcattcttgttactaaat |
41426059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 41431387 - 41431492
Alignment:
| Q |
14 |
tgagcagaatccgaagaattgggctnnnnnnntccaggaagagtggaggattttggagaagcattttccgggtgagtttagtattcttgatacgaaatat |
113 |
Q |
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|||||||||||| |||| ||||||| |||||||| |||||| || |||||| ||||||| || || ||||||||||||| |||||| ||||| |
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| T |
41431387 |
tgagcagaatccaaagagttgggctaaaaaggtccaggaacagtggaaaatgttggaggagcatttgccaggcgagtttagtattcctgatactaaatag |
41431486 |
T |
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| Q |
114 |
cttgta |
119 |
Q |
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|||||| |
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| T |
41431487 |
cttgta |
41431492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 5445 - 5549
Alignment:
| Q |
7 |
tatttcctgagcagaatccgaagaattgggctnnnnnnntccaggaagagtggaggattttggagaagcattttccgggtgagtttagtattcttgatac |
106 |
Q |
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||||| ||||| ||||||| |||| ||||||| ||||||||||||||| |||||||||||| || | |||||||||||||| ||||||| ||| |
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| T |
5445 |
tattttctgagtagaatccaaagagttgggctaaaaaaatccaggaagagtggaagattttggagaatcacgtgccgggtgagtttagcattcttgttac |
5544 |
T |
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| Q |
107 |
gaaat |
111 |
Q |
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|||| |
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| T |
5545 |
taaat |
5549 |
T |
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Target: scaffold0274 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 18013 - 17909
Alignment:
| Q |
7 |
tatttcctgagcagaatccgaagaattgggctnnnnnnntccaggaagagtggaggattttggagaagcattttccgggtgagtttagtattcttgatac |
106 |
Q |
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||||| ||||| ||||||| |||| ||||||| ||||||||||||||| |||||||||||| || | |||||||||||||| ||||||| ||| |
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| T |
18013 |
tattttctgagtagaatccaaagagttgggctaaaaaaatccaggaagagtggaagattttggagaatcacgtgccgggtgagtttagcattcttgttac |
17914 |
T |
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| Q |
107 |
gaaat |
111 |
Q |
| |
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|||| |
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|
| T |
17913 |
taaat |
17909 |
T |
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