View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18707_high_5 (Length: 425)
Name: NF18707_high_5
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 499960 - 500171
Alignment:
| Q |
11 |
cataggacaagatgaacgtaaaagtaaccagaatcttaaccatgaaagcaataaagtgtgttttacgtcctcatcatgaaagaaggtatcacttgtgatc |
110 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
499960 |
catagggcaagatgaacgtaaacgtaactagaatcttaaccatgaaagcaatgaagtgtgttttacatcctcatcatggaagaaggtatcacttgtgatc |
500059 |
T |
|
| Q |
111 |
tgattacaacatgtaatcagagtgccgattacaaaaaggttggcgaaacacattttctaaagctacatcaaacggttacgacggagaacattcgtgttca |
210 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
500060 |
tgattacaacatgtaatcagagtgcagattacaaaaaggttggcgaaacacattttctaaagctacatcaaacggttacgacgaagaacattcgtgttca |
500159 |
T |
|
| Q |
211 |
gatccatatttt |
222 |
Q |
| |
|
|||||||||||| |
|
|
| T |
500160 |
gatccatatttt |
500171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University