View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_high_6 (Length: 387)
Name: NF18707_high_6
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 376
Target Start/End: Complemental strand, 36278654 - 36278282
Alignment:
| Q |
5 |
caatatacattacacaagtaatatatagccagaaacataatttcacaattgagtattgaactttaaccaacataaattttcagagtatttttaaaaagaa |
104 |
Q |
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| T |
36278654 |
caatatacattacacaagtaatatatagccagaaacataatttcacaattgaatattgaactttgaccaacataaattttcagagtatttttaaaaagaa |
36278555 |
T |
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| Q |
105 |
attatgagaaaaattaatttataaacttacaggtatcttagagtggaaatatttcccaattccttaggaatctcccctgataaatgattaacaaatagcg |
204 |
Q |
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| T |
36278554 |
attatgagaaaaattaatttataaacttacaggtatcttagagtggtaatatttcccaattccttaggaatctcccctgataaacgattaacaaatagcg |
36278455 |
T |
|
| Q |
205 |
agctgcataatac-gtgtatttatttaatacaaaaggcaaagtaactaaatgaaaacttcaattggtttataaagaacttacattgaagttagttcggtt |
303 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36278454 |
agctgcataacacggtgtatttatttaatacaaaaggcaaagtaactaaatgaaaacttcaattggtttataaagaacttacattgaagttagttcggtt |
36278355 |
T |
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| Q |
304 |
gaagcccattccttcgggattgtaccatttaagtagtttaacgcaaaatcactacaatgagaacacgtttcat |
376 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
36278354 |
gaagcccattccttcgggattgtaccatttaggtagtttaacgcaaaatcactacaatgagaacacatttcat |
36278282 |
T |
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