View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18707_low_10 (Length: 377)

Name: NF18707_low_10
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18707_low_10
NF18707_low_10
[»] chr8 (7 HSPs)
chr8 (16-367)||(8144762-8145112)
chr8 (238-309)||(6403346-6403417)
chr8 (238-330)||(24673779-24673872)
chr8 (237-300)||(33376739-33376802)
chr8 (156-229)||(30870966-30871039)
chr8 (248-337)||(17904218-17904306)
chr8 (240-348)||(29239481-29239589)
[»] chr1 (4 HSPs)
chr1 (141-305)||(33069194-33069358)
chr1 (238-334)||(9995334-9995430)
chr1 (246-334)||(10006222-10006310)
chr1 (270-348)||(50973514-50973592)
[»] chr4 (5 HSPs)
chr4 (180-337)||(10320858-10321009)
chr4 (250-348)||(13436978-13437077)
chr4 (275-337)||(24405040-24405102)
chr4 (239-345)||(9607679-9607785)
chr4 (297-342)||(2388766-2388811)
[»] chr3 (2 HSPs)
chr3 (217-337)||(13655502-13655623)
chr3 (159-196)||(3170681-3170718)
[»] chr2 (3 HSPs)
chr2 (238-301)||(34813792-34813855)
chr2 (239-337)||(35349708-35349806)
chr2 (239-335)||(43674423-43674519)
[»] chr5 (2 HSPs)
chr5 (202-332)||(17001480-17001610)
chr5 (238-337)||(16787451-16787550)
[»] chr6 (1 HSPs)
chr6 (247-336)||(8491441-8491530)
[»] scaffold0655 (1 HSPs)
scaffold0655 (248-348)||(3494-3594)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 8145112 - 8144762
Alignment:
Q  16 tcttctacataaattatcctttgatggtatccaattctgaaacaacctccaaaccagaaccgcaaccttcaacgggaccaatccattcaaagctgctgct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  8145112 tcttctacataaattatcctttgatggtatccaattctgaaacaacctccaaaccagaaccgcagccttcaacgggaccaatccattccaagctgctgct 8145013  T
Q  116 aatttcctatgctcctttactagaactgcggattttcatacgaaaaataattcgaaggaatacatgaggattttgctgcgctttaacttagtcagacgaa 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  8145012 aatttcctattctcctttactagaactgcggattttcatacgaaaaatatttcgaaggaatatatgaggattttgctgcgctttaccttaatcagacgaa 8144913  T
Q  216 ttttcctgcggatttttctgttgcaggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctactttt 315  Q
     |||||||||||  |||  | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8144912 gtttcctgcggagctttacgctgca-gaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacgttt 8144814  T
Q  316 ccttaggaaattccgcaggtatatctgcggattcctgcgatttgtttatttt 367  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  8144813 ccttaggaaattccgcaggtatttcttcggattcctgcgatttgtttatttt 8144762  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 6403417 - 6403346
Alignment:
Q  238 gcaggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttct 309  Q
    ||||||||||||||||||| ||||||| | |||||| |||| ||||||||||||||||| ||||||||||||    
T  6403417 gcaggaacatccgcaggtacctattattttgctgaggatttacctgcggaattattatcaaatattatttct 6403346  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 24673779 - 24673872
Alignment:
Q  238 gcaggaacatccgcaggtaacta-ttatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccg 330  Q
    |||||||| |||||||||||||| || | | || | | |||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||    
T  24673779 gcaggaacgtccgcaggtaactactttttttgcagtggattttcctccggaattattgtccattattatttttacttttccttaggaaattccg 24673872  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 33376739 - 33376802
Alignment:
Q  237 tgcaggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaat 300  Q
    |||||||||||||||||||||||||||| | |||||| |||||| ||| |||| ||||||||||    
T  33376739 tgcaggaacatccgcaggtaactattattttgctgaggattttcttgctgaataattatccaat 33376802  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 30870966 - 30871039
Alignment:
Q  156 cgaaaaataattcgaaggaatacatgaggattttgctgcgctttaacttagtcagacgaattttcctgcggatt 229  Q
    |||||||||||  | |||||||| |||||||||||||||| |||   ||||||||||||| |||||||||||||    
T  30870966 cgaaaaataatctgcaggaatacctgaggattttgctgcggtttctattagtcagacgaagtttcctgcggatt 30871039  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 17904306 - 17904218
Alignment:
Q  248 ccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggtat 337  Q
    |||||||||||| |||| | |||||| |||||||||||  || |||  | ||||||||||| || ||||||||||||||||| |||||||    
T  17904306 ccgcaggtaacttttatttagctgaggattttcctgcgatat-attgacgaatattatttcaacgtttccttaggaaattccacaggtat 17904218  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 29239481 - 29239589
Alignment:
Q  240 aggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggtatat 339  Q
    ||||| ||||||||||||   |||| | |||||| |||||| ||||||  ||||  | ||||||||||| || ||||| | |||||||||||||||||      
T  29239481 aggaaaatccgcaggtaaagtttattttgctgaggattttcttgcggatctattcacgaatattatttcaacgtttccattggaaattccgcaggtatta 29239580  T
Q  340 ctgcggatt 348  Q
    |||||||||    
T  29239581 ctgcggatt 29239589  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 141 - 305
Target Start/End: Original strand, 33069194 - 33069358
Alignment:
Q  141 ctgcggattttcatacgaaaaataattcgaaggaatacatgaggattttgctgcgctttaacttagtcagacgaattttcctgcggatttttctgttgca 240  Q
    ||||||| |||| | ||||| ||||| || |||||||| |||||||||||||| | |||| |||||||||||||| ||||||||||| |||| || ||||    
T  33069194 ctgcggagtttcgtgcgaaatataatccgcaggaatacctgaggattttgctggggtttaccttagtcagacgaagtttcctgcggagttttatgctgca 33069293  T
Q  241 ggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattat 305  Q
    ||  |||||||| ||||||||||| | |||||| |||||| ||||||||||||||||||||||||    
T  33069294 ggtgcatccgcatgtaactattattttgctgaggattttcatgcggaattattatccaatattat 33069358  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 9995430 - 9995334
Alignment:
Q  238 gcaggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcagg 334  Q
    ||||||| ||||||||||| || |||| | |||||| |||||||||||||| || | || |||| |||||  || |||||||||| |||||||||||    
T  9995430 gcaggaaaatccgcaggtatcttttattttgctgaggattttcctgcggaactaatgtcgaataatattttgacgtttccttaggtaattccgcagg 9995334  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 334
Target Start/End: Complemental strand, 10006310 - 10006222
Alignment:
Q  246 atccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcagg 334  Q
    |||||||||||  | |||| | | |||| |||||||||||||| |||| || |||| |||||| || |||||||||| |||||||||||    
T  10006310 atccgcaggtattttttattttgatgaggattttcctgcggaactattgtcgaataatatttcgacgtttccttaggtaattccgcagg 10006222  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 50973592 - 50973514
Alignment:
Q  270 tgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggtatatctgcggatt 348  Q
    |||| |||||||||||||| ||||  | ||||||||||| || ||| |||||| ||||||||| ||||  |||||||||    
T  50973592 tgaggattttcctgcggaactattgactaatattatttcaacgttttcttaggtaattccgcatgtattcctgcggatt 50973514  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 10320858 - 10321009
Alignment:
Q  180 tgaggattttgctgcgctttaacttagtcagacgaattttcctgcggatttttctgttgcaggaacatccgcaggtaactattatatcgctgagaatttt 279  Q
    |||||||||||||||| ||   |||||||||||||| |||||||| ||||||| || ||||| || ||||| |  |||||||||| |  ||||| |||||    
T  10320858 tgaggattttgctgcggttacccttagtcagacgaagtttcctgccgatttttatgctgcagcaatatccgaaaataactattattttactgaggatttt 10320957  T
Q  280 cctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggtat 337  Q
    |||||||||||  ||||||||||      ||| |||||| ||||||||||||||||||    
T  10320958 cctgcggaattcctatccaatat------tacatttcctcaggaaattccgcaggtat 10321009  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 13437077 - 13436978
Alignment:
Q  250 gcaggtaactattatatcgctgagaattttcctgcggaattattatccaa-tattatttctacttttccttaggaaattccgcaggtatatctgcggatt 348  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||||| ||| |||||||| ||||  |||||||||| |||||| |  |||||||||    
T  13437077 gcaggtaactattattttgctgaggattttcctgcggaattattatccaattatcatttctacgtttcactaggaaattctgcaggtgttgctgcggatt 13436978  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 24405040 - 24405102
Alignment:
Q  275 attttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggtat 337  Q
    |||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||    
T  24405040 attttcctgcggaattattatcaaatattatttctccctttccttatgaaattccgcaggtat 24405102  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 9607785 - 9607679
Alignment:
Q  239 caggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggtata 338  Q
    |||||| ||||||||||||||| ||| | |||||  ||||  |||||| | ||||  | ||||| |||||  | ||||||||| |||||||||||||||     
T  9607785 caggaaaatccgcaggtaactactattttgctgaagatttctctgcggtactattggcgaatatgatttcagcgtttccttagtaaattccgcaggtatt 9607686  T
Q  339 tctgcgg 345  Q
    |||||||    
T  9607685 tctgcgg 9607679  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 2388811 - 2388766
Alignment:
Q  297 caatattatttctacttttccttaggaaattccgcaggtatatctg 342  Q
    ||||||||||||| | ||||||||||||||||||| || |||||||    
T  2388811 caatattatttctgcgtttccttaggaaattccgctggaatatctg 2388766  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 13655623 - 13655502
Alignment:
Q  217 tttcctgcggatttttctgttgcaggaacatccgcaggtaactattatatc-gctgagaattttcctgcggaattattatccaatattatttctactttt 315  Q
    ||||||||||||| ||| | |||||||||  |||||||||| ||||||||  |||| | | |||||||||||||||||| | | |||||||||| |  ||    
T  13655623 tttcctgcggattgttcagctgcaggaacgcccgcaggtaaatattatatttgctgcgcaatttcctgcggaattattaccgagtattatttcttcgatt 13655524  T
Q  316 ccttaggaaattccgcaggtat 337  Q
    ||||||||||||||||||||||    
T  13655523 ccttaggaaattccgcaggtat 13655502  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 3170681 - 3170718
Alignment:
Q  159 aaaataattcgaaggaatacatgaggattttgctgcgc 196  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  3170681 aaaataattcgcaggaatacataaggattttgctgcgc 3170718  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 34813792 - 34813855
Alignment:
Q  238 gcaggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaata 301  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  34813792 gcaggaacatccgtaggtaactattatttagctgagaattttcctgcggaattatcatccaata 34813855  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 337
Target Start/End: Complemental strand, 35349806 - 35349708
Alignment:
Q  239 caggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggtat 337  Q
    |||||| |||||||||||||| | | || |||||| |||||||||||||| ||||    ||||||||||  || |||||||||| ||||||||||||||    
T  35349806 caggaaaatccgcaggtaactttaaaattgctgaggattttcctgcggaactattgaggaatattatttggacgtttccttaggtaattccgcaggtat 35349708  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 43674423 - 43674519
Alignment:
Q  239 caggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggt 335  Q
    |||||||||||  |||||||||||||   |||||| ||||| ||||| |||||||||| ||||| |||||||| ||  | ||||||||| |||||||    
T  43674423 caggaacatccataggtaactattattctgctgaggatttttctgcgaaattattatcgaatataatttctacattatcgtaggaaatttcgcaggt 43674519  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 332
Target Start/End: Complemental strand, 17001610 - 17001480
Alignment:
Q  202 cttagtcagacgaattttcctgcggatttttctgttgcaggaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaata 301  Q
    |||||| ||||||| ||||||||||||||   ||  |||||||||||| ||||||| |||||| | ||| || ||||||||||  ||||||| |||||||    
T  17001610 cttagtaagacgaagtttcctgcggatttagatgccgcaggaacatccacaggtaagtattattttgctaaggattttcctgcataattattttccaata 17001511  T
Q  302 ttatttctacttttccttaggaaattccgca 332  Q
    |||||||||  || |||||||| ||| ||||    
T  17001510 ttatttctatattgccttaggatattgcgca 17001480  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 16787550 - 16787451
Alignment:
Q  238 gcaggaacatccgcaggta-actattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggta 336  Q
    ||||||||||||||||||| ||| | || | |||||| |||||||||||||| ||||  | | ||||||||| || |||||||||||||||||||| |||    
T  16787550 gcaggaacatccgcaggtacactttaattt-gctgaggattttcctgcggaactattgacgattattatttcaacatttccttaggaaattccgcacgta 16787452  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 336
Target Start/End: Complemental strand, 8491530 - 8491441
Alignment:
Q  247 tccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggta 336  Q
    ||||||||||| | |||| | |||||| |||||| ||||||||| || || |||||| |||| || ||||||||| ||||||||||||||    
T  8491530 tccgcaggtaagttttattttgctgaggattttcttgcggaattgttgtcgaatattttttcaacgtttccttagaaaattccgcaggta 8491441  T

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Target: scaffold0655 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 3594 - 3494
Alignment:
Q  248 ccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacttttccttaggaaattccgcaggtatatctgcggat 347  Q
    |||||||||||  |||| | |||||| ||||| |||||||| | ||  | ||| ||||||| || |||||| ||||||||| ||||||||  ||||||||    
T  3594 ccgcaggtaacatttattttgctgaggatttttctgcggaactgttgacgaatgttatttcaacgtttcctaaggaaattctgcaggtattgctgcggat 3495  T
Q  348 t 348  Q
    |    
T  3494 t 3494  T

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