View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18707_low_12 (Length: 361)
Name: NF18707_low_12
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 42701006 - 42701340
Alignment:
| Q |
12 |
atcatcagctatacaacaatgatggaggccaggcaactcaattctcggctccaacttcttctgacctttattactgcactttggagtcgtcctctgcaac |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42701006 |
atcatcagctatacaacaatgatggaggccaagcaactcaattctcggctccaacttcttctgacctttattactgcactttggagtcgtcctctgcagc |
42701105 |
T |
|
| Q |
112 |
tggaagtttcgccgtttacaactctccttcaactgttagtttctcacctaacgatagtccaatgtcgcagcaagaatctcagtcttatccatctgataag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42701106 |
tggaagtttcgccgtttacaactctccttcaactgttagtttctcgcctaacgatagtccaatgtcgcagcaagaatctcagtcttatccatctgataag |
42701205 |
T |
|
| Q |
212 |
tatcattcccctgacaatacctatggctcgccaatgagtggatcatgcataaccgaagatttaagtagcttcaaacacaagcttagagagttggaaagtg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42701206 |
tatcattcccctgacaatacctatggctcgccaatgagtggatcatgcataaccgaagatttaagtagcttcaaacacaagcttagagagttggaaagtg |
42701305 |
T |
|
| Q |
312 |
taatgcttggtcctgactctgataatcttgatagt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
42701306 |
taatgcttggtcctgactctgataatcttgatagt |
42701340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University