View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18707_low_14 (Length: 345)

Name: NF18707_low_14
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18707_low_14
NF18707_low_14
[»] chr8 (3 HSPs)
chr8 (17-328)||(44667639-44667961)
chr8 (157-236)||(5538226-5538306)
chr8 (181-309)||(6816851-6816995)
[»] chr6 (2 HSPs)
chr6 (27-309)||(34518583-34518880)
chr6 (157-229)||(3508666-3508739)
[»] chr2 (2 HSPs)
chr2 (27-168)||(29963854-29963995)
chr2 (27-328)||(2037936-2038229)
[»] scaffold0004 (1 HSPs)
scaffold0004 (27-251)||(188868-189102)
[»] chr7 (4 HSPs)
chr7 (17-80)||(12539056-12539119)
chr7 (250-328)||(28382732-28382810)
chr7 (157-236)||(16420459-16420539)
chr7 (250-328)||(28387086-28387164)
[»] chr4 (2 HSPs)
chr4 (251-328)||(28657526-28657603)
chr4 (182-244)||(28657267-28657327)
[»] scaffold0003 (1 HSPs)
scaffold0003 (157-236)||(9171-9251)
[»] chr5 (1 HSPs)
chr5 (190-246)||(37940308-37940364)
[»] chr1 (1 HSPs)
chr1 (190-238)||(51784649-51784697)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 44667961 - 44667639
Alignment:
Q  17 atactcgataaaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataatgataataggattcttacttgtctccctagattgaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44667961 atactcgataaaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataatgataataggattcttacttgtctccctagagtgaat 44667862  T
Q  117 gtttattttctctccttcctccttcagaacccttttcccgttctctttctctctatgtattttgtttttgttcttcaaagcatagaatgagtgtgtgtga 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44667861 gtttgttttctctccttcctccttcagaacccttttcccgttctc-ttctttctatgtcttttgtttttgttcttcaaagcatagaatgagtgtgtgtga 44667763  T
Q  217 aaatgaataggaaccggttattctaa------------taactctcttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatgatgat 304  Q
    ||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  44667762 aaatgaataggaaccggttattctaataactctcccactaactctcttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcat 44667663  T
Q  305 atgaatagggaagaagttgtatct 328  Q
    || || ||||||||||||||||||    
T  44667662 ataaacagggaagaagttgtatct 44667639  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 5538226 - 5538306
Alignment:
Q  157 ttctctttctctctatgtattttgtttttgttcttcaaagcatag-aatgagtgtgtgtgaaaatgaataggaaccggtta 236  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| || | ||||||||||||| |||||||||| |||||    
T  5538226 ttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaaaaggaataggaactggtta 5538306  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 6816995 - 6816851
Alignment:
Q  181 tttttgttcttcaaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataactctct----------------tcctaaaaatgtg 264  Q
    |||||||||||||||| |||||||| |||||||| |||| ||||| |||||||||||| | ||||||||||                | |||||||||||    
T  6816995 tttttgttcttcaaagtatagaatgggtgtgtgttaaaaagaataagaaccggttattattataactctctcactcactaccttccttgctaaaaatgtg 6816896  T
Q  265 gaactaaatcatggagtggaaagtggtgtgtcatgatgatatgaa 309  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||    
T  6816895 gaactaattcatggagtggaaagtggtgtgtcatggtcatatgaa 6816851  T

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Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 309
Target Start/End: Original strand, 34518583 - 34518880
Alignment:
Q  27 aaaatagggaatgattttggttcatcaata---atagttgcaatgaagagtaataatgataataggattcttacttgtctccctagattgaatgtttatt 123  Q
    ||||||||||||||||||||||||||| ||   ||| |||  ||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||    
T  34518583 aaaatagggaatgattttggttcatcattattaataattgacatgaagagtgataatgatgataggattcttacttgtctccctagagtgaatatttgtt 34518682  T
Q  124 ttctctccttcctccttcagaacccttttcccgttctctttctctctatgtattttgtttttgttcttcaaagcatagaatgagtgtgtgtgaaaatgaa 223  Q
    ||||||||||||||||||||| |||||| || |   ||| ||||||||||||||||| ||||||||||||||| |||||||| || |||||||||| |||    
T  34518683 ttctctccttcctccttcagacccctttcccag---tctctctctctatgtattttgattttgttcttcaaagtatagaatgggtatgtgtgaaaaagaa 34518779  T
Q  224 taggaaccggttattctaataactct----------------cttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatgatgatatg 307  Q
    |||||||| |||||| ||||||||||                ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  34518780 taggaacc-gttattataataactctttcactcgctaacttccttgctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatg 34518878  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 3508739 - 3508666
Alignment:
Q  157 ttctctttctctctatgtattttgtttttgttcttcaaagcatag-aatgagtgtgtgtgaaaatgaataggaa 229  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| || | ||||||||||||| || ||||||    
T  3508739 ttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaaaaagagtaggaa 3508666  T

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Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 29963854 - 29963995
Alignment:
Q  27 aaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataatgataataggattcttacttgtctccctagattgaatgtttattttc 126  Q
    ||||||||||||||||||||||||||| ||||| |||  ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  29963854 aaaatagggaatgattttggttcatcattaataattgacatgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttc 29963953  T
Q  127 tctccttcctccttcagaacccttttcccgttctctttctct 168  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  29963954 tctccttcctccttcagaccccctttcccgttctctttctct 29963995  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 328
Target Start/End: Complemental strand, 2038229 - 2037936
Alignment:
Q  27 aaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataatgataataggattcttacttgtctccctagattgaatgtttattttc 126  Q
    |||||||||||||||||||||| |||| ||||| |||  ||||| ||| ||| |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  2038229 aaaatagggaatgattttggtt-atcattaataattgacatgaatagtgatagtgatgataggattcttacttgtctccctagagtgaatgtttgttttc 2038131  T
Q  127 tctccttcctccttcagaacccttttcccgttctctttctctctatgtattttgt-----ttttgttcttcaaagcatagaatgagtgtgtgtgaaaatg 221  Q
    |||||                   ||| | ||||||||||  |||||||||||||     ||||||||||||||| |||||||| || |||||||||| |    
T  2038130 tctcc-------------------ttctctttctctttcttcctatgtattttgtttttgttttgttcttcaaagtatagaatgggtatgtgtgaaaa-g 2038051  T
Q  222 aataggaaccg-gttattct-------aataactctcttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatgatgatatgaatagg 313  Q
    |||||||||||  | | |||       | |||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |    
T  2038050 aataggaaccgaataactctctcactcactaacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatg 2037951  T

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Target: scaffold0004 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 188868 - 189102
Alignment:
Q  27 aaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataatgataataggattcttacttgtctccctagattgaatgtttattttc 126  Q
    |||||||||||||||| |||||||||| ||||| ||  |||||||| | |||||||| |||||||||||||||||||||||| | ||||||||| |||||    
T  188868 aaaatagggaatgattctggttcatcattaataattaaaatgaagatttataatgatgataggattcttacttgtctccctaaagtgaatgtttgttttc 188967  T
Q  127 tctccttcctccttcagaacccttttcccg------ttctctttctctctatgtattttgt-----ttttgttcttcaaagcatagaatgagtgtgtgtg 215  Q
    |||||||||||||| ||| ||| |||||||      ||||||||||| |||||||||||||     ||||||||||||||| |||||||| || ||||||    
T  188968 tctccttcctcctttagaccccctttcccgttccctttctctttctccctatgtattttgtttttgttttgttcttcaaagtatagaatgggtatgtgtg 189067  T
Q  216 aaaatgaataggaaccggttattctaataactctct 251  Q
    ||||  ||||||||||  ||||| ||||||||||||    
T  189068 aaaaacaataggaacc-attattataataactctct 189102  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 12539056 - 12539119
Alignment:
Q  17 atactcgataaaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataat 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12539056 atactcgataaaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataat 12539119  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 28382810 - 28382732
Alignment:
Q  250 cttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatgatgatatgaatagggaagaagttgtatct 328  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||    
T  28382810 cttcctaaaatagtggaactaaatcatggagtggaaagtggtgtgtcacggtcatatgaacagggaagaagttgtatct 28382732  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 16420539 - 16420459
Alignment:
Q  157 ttctctttctctctatgtattttgtttttgttcttcaaagcatag-aatgagtgtgtgtgaaaatgaataggaaccggtta 236  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| || | ||||||||||||| ||||||||||||||||    
T  16420539 ttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaaaaagaataggaaccggtta 16420459  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 28387164 - 28387086
Alignment:
Q  250 cttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatgatgatatgaatagggaagaagttgtatct 328  Q
    ||||||||||   ||||||||||||||||||||||||||| ||||||| | | ||||||||| ||||||||||||||||    
T  28387164 cttcctaaaataatggaactaaatcatggagtggaaagtgatgtgtcacggtcatatgaataaggaagaagttgtatct 28387086  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 28657526 - 28657603
Alignment:
Q  251 ttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatgatgatatgaatagggaagaagttgtatct 328  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||| |||||||    
T  28657526 ttcctaaaaaagtggaactaaatcatggagtggaaagtggtgtgtcgtggtcatatgaataaggaagaagctgtatct 28657603  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 28657267 - 28657327
Alignment:
Q  182 ttttgttcttcaaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaata 244  Q
    ||||||||||||||| |||||||| ||||  ||||||| |||||||||||||||||| |||||    
T  28657267 ttttgttcttcaaagtatagaatgggtgt--gtgaaaaagaataggaaccggttattataata 28657327  T

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Target: scaffold0003 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 9251 - 9171
Alignment:
Q  157 ttctctttctctctatgtattttgtttttgttcttcaaagcatag-aatgagtgtgtgtgaaaatgaataggaaccggtta 236  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| || | ||||||||||||| ||||||||||||||||    
T  9251 ttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaaaaagaataggaaccggtta 9171  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 37940308 - 37940364
Alignment:
Q  190 ttcaaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataac 246  Q
    ||||||| |||||||| ||||| ||||||| |||||||||||||||||| |||||||    
T  37940308 ttcaaagtatagaatgggtgtgggtgaaaaagaataggaaccggttattataataac 37940364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 51784649 - 51784697
Alignment:
Q  190 ttcaaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttatt 238  Q
    ||||||| ||||||||  |||| ||||||| ||||||||||||||||||    
T  51784649 ttcaaagtatagaatggttgtgggtgaaaaagaataggaaccggttatt 51784697  T

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