View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_low_18 (Length: 314)
Name: NF18707_low_18
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_low_18 |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 25421 - 25118
Alignment:
| Q |
1 |
atatacaccttcacacaaactagaattacggaagactggtctagcaccgaatggaaatcttcgagtatgtctccaaacattatcacctaaactaaagact |
100 |
Q |
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||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
25421 |
atatacaccttcacataaactggaattacggaagattggtctagcaccgaatggaaatcttcgaatatgtctccaaacattatcacccaaactaaagact |
25322 |
T |
|
| Q |
101 |
ttcacttcgttaccagttgaacttaatgacacaaccttataagtgtcagttaaactctcataaccaaacacgaacacagaaaatctcgaaatatgcatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
25321 |
ttcacttcgttaccagttgaacttaatgacacaaccttataagtgtcagttaaactctcataaccaaacacaaacacataaaatctcgaaatatgcatgt |
25222 |
T |
|
| Q |
201 |
cattaaaatagacatcagatcctaatacatcagatatttttctggtagcagggttccagaaacggaaccacacttttttatacttagtactctcgttaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25221 |
cattaaaatagacatcagatcctaatacatcagatatttttctggtagcagggttccagaaacggaaccacacttttttatacttagtactctcgttaca |
25122 |
T |
|
| Q |
301 |
ataa |
304 |
Q |
| |
|
|||| |
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|
| T |
25121 |
ataa |
25118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 8372 - 8075
Alignment:
| Q |
1 |
atatacaccttcacacaaactagaattacggaagactggtctagcaccgaatggaaatcttcgagtatgtctccaaacattatcacctaaactaaagact |
100 |
Q |
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||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||||||| |
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| T |
8372 |
atatacaccatcacacaaactggaattgcggaagactggtctagcaccgaatggaaatctttgaatatatctccaaacattatcacccaaactaaagact |
8273 |
T |
|
| Q |
101 |
ttcacttcgttaccagttgaacttaatgacacaaccttataagtgtcagttaaactctcataaccaaacacgaacacagaaaatctcgaaatatgcatgt |
200 |
Q |
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||| ||||||||||||||||||||| | |||||| ||||||||||| ||| |||| |||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
8272 |
ctcatttcgttaccagttgaacttaaggccacaactttataagtgtcggttgaactatcataaccaaacacgaacacagtaaatcttgaaatatgcatgt |
8173 |
T |
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| Q |
201 |
cattaaaatagacatcagatcctaatacatcagatatttttctggtagcagggttccagaaacggaaccacacttttttatacttagtactctcgtta |
298 |
Q |
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|||||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||||||||| ||| |||||||||||| || ||||||| |
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| T |
8172 |
cattaaaatagacatcagatcctaatacttgagaaatgtttctggtagcggggttccagaaacggaaccaaactgttttatacttagcacactcgtta |
8075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 3697 - 3656
Alignment:
| Q |
229 |
atcagatatttttctggtagcagggttccagaaacggaacca |
270 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||| |
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| T |
3697 |
atcagatatttttctggtggcggggttccagaaacgtaacca |
3656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 298
Target Start/End: Original strand, 22473494 - 22473716
Alignment:
| Q |
70 |
tctccaaacattatcacctaaactaaagactttcacttcgttaccagttgaacttaatgacacaaccttataagtgtcagttaaactctcataaccaaac |
169 |
Q |
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|||||||||||||||||| ||||| |||||| |||||| ||| |||||||||||||| ||||| ||||||||||| |||||| |||| |||||| ||||| |
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| T |
22473494 |
tctccaaacattatcacccaaactgaagactctcacttggttgccagttgaacttaaggacaccaccttataagtctcagttgaactatcataaacaaac |
22473593 |
T |
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| Q |
170 |
acgaacacagaaaatctcgaaata-tgcatgtcattaaaatagacatcagatcctaatacatcagatatttttctggtagcagggttccagaaacggaac |
268 |
Q |
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|| || ||||| |||||| | |||| |||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
22473594 |
ac------agtcaatct-gaaataatttatgttattataatagacattagatcctaatacatcagatatttttctagtagctgggttccagaaacggaac |
22473686 |
T |
|
| Q |
269 |
cacacttttttatacttagtactctcgtta |
298 |
Q |
| |
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|||||||||||| | ||||| |||||||| |
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| T |
22473687 |
cacacttttttacaattagtgttctcgtta |
22473716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 22534341 - 22534236
Alignment:
| Q |
70 |
tctccaaacattatcacctaaactaaagactttcacttcgttaccagttgaacttaatgacacaaccttataagtgtcagttaaactctcataaccaaac |
169 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||| || ||||| |||| |||| | ||||||||||| ||||| ||| || | |||||||||||| |
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| T |
22534341 |
tctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttgaattatcataaccaaac |
22534242 |
T |
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| Q |
170 |
acgaac |
175 |
Q |
| |
|
|||||| |
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| T |
22534241 |
acgaac |
22534236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 13888582 - 13888625
Alignment:
| Q |
229 |
atcagatatttttctggtagcagggttccagaaacggaaccaca |
272 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||||| |
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| T |
13888582 |
atcagatatttttctggtggcgggattccagaaacggaaccaca |
13888625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 21219213 - 21219267
Alignment:
| Q |
229 |
atcagatatttttctggtagcagggttccagaaacggaaccacacttttttatac |
283 |
Q |
| |
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|||||||||| ||| |||||| |||||||| ||||| |||||||||||| ||||| |
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| T |
21219213 |
atcagatattgttcgggtagccgggttccataaacgaaaccacacttttgtatac |
21219267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 22028209 - 22028168
Alignment:
| Q |
229 |
atcagatatttttctggtagcagggttccagaaacggaacca |
270 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
22028209 |
atcagatattgtcctggtagcagggttccagacacggaacca |
22028168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 42297680 - 42297628
Alignment:
| Q |
229 |
atcagatatttttctggtagcagggttccagaaacggaaccacacttttttat |
281 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||||||||||| || ||||||| |
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|
| T |
42297680 |
atcagatattctcctggtagcggggttccagaaacggaaccaaacatttttat |
42297628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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