View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_low_2 (Length: 804)
Name: NF18707_low_2
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 679; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 16 - 778
Target Start/End: Original strand, 40893630 - 40894392
Alignment:
| Q |
16 |
acttttcaattttcttacaaaaactctacaatcatttcctttagatccatcttctcaccctcttaaacctagaattcatttggaagaggagattttcaca |
115 |
Q |
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| T |
40893630 |
acttttcaatcttcttacaaaaactctacaatcatttcctttagatccatcttctcaccctcttaaacctagaattcatcaggaagaggagattttcaca |
40893729 |
T |
|
| Q |
116 |
ttcataatttctactcatatttagaagaagactaaaatttggtaccattgttttaatttatactatctccgatacttcttttatgagatccttatttcgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40893730 |
ttcataatttctactcatatttagaagaagactaaaatttggtaccattgttttaatttatactatctccgatacttcttttatgagatccttatttcga |
40893829 |
T |
|
| Q |
216 |
aattctcatatgggttttgaactaatggtgtttaggtctttgtttctggtatcaaatctgaatctctttgatagagttatggttttgtgggttttggttt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40893830 |
aattctcatatgggttttgaactaatggtgtttaggtctttgtttttggtatcaaatctgaatctctttgatagacttatggttttgtgggttttggttt |
40893929 |
T |
|
| Q |
316 |
tgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcaggga |
415 |
Q |
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| T |
40893930 |
tgagctgactgaaggaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcaggga |
40894029 |
T |
|
| Q |
416 |
gcttggactattttaggagttgtttgtctgtttcnnnnnnnnctctctcgccatttcagcttcaaatttgcgtttgatttttcatttagggagtgagtga |
515 |
Q |
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| T |
40894030 |
gcttgaactatttcaggagttgtttgtctgtttcttttttttttctctcgccatttcagcttcaaatttgcgtttgatttttcatttaggaagtgagtga |
40894129 |
T |
|
| Q |
516 |
gatcatttgtagtggatgtatgtgtagcttcttgtggtgtgtctcagaattatgtggtttctgtacatatggagctacaaaaaccatgaatgttgtaatg |
615 |
Q |
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| T |
40894130 |
gatcatttgtagtggatgtatgtgtagcttcttgtggtgtgtctcagaattatgtggtttgtgtacatatggagctacaaaaatcatgaatgttgtaatg |
40894229 |
T |
|
| Q |
616 |
tttgtggtgtgttaaagttggaattgttttacaattaggacccaaaagttgtcttatgagaaaaggatgaactttgatttacattatttacttttgttgt |
715 |
Q |
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| T |
40894230 |
tttgtggtgtgttaaagttggaattgttttacaattaggacccaaaagttgtcttatgagaaaatgatgaactttgatttacattatttacttttgttgt |
40894329 |
T |
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| Q |
716 |
taatcttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaatttagaa |
778 |
Q |
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| T |
40894330 |
taattttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaatttagaa |
40894392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 314 - 409
Target Start/End: Original strand, 31621235 - 31621330
Alignment:
| Q |
314 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
409 |
Q |
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| T |
31621235 |
tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt |
31621330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 314 - 409
Target Start/End: Original strand, 36666918 - 36667014
Alignment:
| Q |
314 |
tttgagctgactgaatgaactactgtcacccc-attcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
409 |
Q |
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| T |
36666918 |
tttgaactgactgaaggaactaccgtcccccccattcactcactcatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt |
36667014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 706 - 778
Target Start/End: Original strand, 36668704 - 36668776
Alignment:
| Q |
706 |
cttttgttgttaatcttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaatttagaa |
778 |
Q |
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| T |
36668704 |
cttttgttgttaattttttgggttttttaaatctttcttgaatttggttatagagttttgagaaaatttagaa |
36668776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 706 - 778
Target Start/End: Original strand, 31621655 - 31621726
Alignment:
| Q |
706 |
cttttgttgttaatcttatgtggttttt-aaatcgttcttctatttggttatggagttttgggaaaatttagaa |
778 |
Q |
| |
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| T |
31621655 |
cttttgttgttaattttttggggttttttaaatctttcttcaatttggtta--gagttttgagaaaatttagaa |
31621726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 36574895 - 36574828
Alignment:
| Q |
314 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttc |
381 |
Q |
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| T |
36574895 |
tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttc |
36574828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 26530441 - 26530346
Alignment:
| Q |
314 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
409 |
Q |
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| T |
26530441 |
tttgagccgactgaaggaactatcgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttgcttgttgtctgttt |
26530346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 729 - 778
Target Start/End: Complemental strand, 26529995 - 26529946
Alignment:
| Q |
729 |
tttttaaatcgttcttctatttggttatggagttttgggaaaatttagaa |
778 |
Q |
| |
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|||||||||| |||||| |||||||||| |||||||| |||||||||||| |
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| T |
26529995 |
tttttaaatctttcttcaatttggttatagagttttgagaaaatttagaa |
26529946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 776
Target Start/End: Original strand, 17330762 - 17330831
Alignment:
| Q |
707 |
ttttgttgttaatcttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaatttag |
776 |
Q |
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| T |
17330762 |
ttttgtggtcaattttatgcgatttctaaatctttcttctatttggttatggaaatttgagaaaatttag |
17330831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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