View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_low_22 (Length: 282)
Name: NF18707_low_22
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 2357319 - 2357062
Alignment:
| Q |
18 |
ctttgctgggttgatatttatagaagatgacaacaaatgtgaaaataaggagccataaggccaaattgatcatagcaatgttccttgaaatcagtgtcaa |
117 |
Q |
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| T |
2357319 |
ctttgctgggttgatatttatagaagatgacaacaaatgtgaaaataaggagccataaggccaaattgatcaaagcaatgttccttgaaatcagtgtcaa |
2357220 |
T |
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| Q |
118 |
ggctagaaaggaaacagcataccccaacaagagtaagagtgagattggaaaaatagtaacaggatgttgtagttgcaagagagtttggagcacacaaatt |
217 |
Q |
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| T |
2357219 |
ggctagaaaggaaacagcataccccaacaagagtatgagtgagattggaaaaatagtaacaggatgttgtaactgtaagagaatttggagcacacaaatt |
2357120 |
T |
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| Q |
218 |
aagaagtatgccatgatgatgtaga---cacttgctgaaaatatattatagttctgtg |
272 |
Q |
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| T |
2357119 |
aagaagtatgccatgatgatgtagagtgagattgctgaaaatatattatagttctgtg |
2357062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 35 - 258
Target Start/End: Complemental strand, 2089381 - 2089149
Alignment:
| Q |
35 |
ttatagaagatgacaacaaatgtgaaaataaggagccataaggccaaattgatcatagcaatgttccttgaaatcagtgtcaaggctagaaaggaaacag |
134 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||| | | |||| ||||||||||| |||||||||||||||||||| |||||| |||| |
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| T |
2089381 |
ttattgaagatgacaacaaatgtgaaaataaggagccataagaccagagttatcagagcaatgttccgtgaaatcagtgtcaaggctaaaaaggacacag |
2089282 |
T |
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| Q |
135 |
cataccccaacaagagtaagagtgagattggaaaaatagtaacaggat-------gtt--gtagttgcaagagagtttggagcacacaaattaagaagta |
225 |
Q |
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| T |
2089281 |
cataccccaacatgagtaagagtgagattggaaaaatactaacaaaatcactagagataggttgttgtaagagagtttggagcacccaaactaagaagaa |
2089182 |
T |
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| Q |
226 |
tgccatgatgatgtagacacttgctgaaaatat |
258 |
Q |
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| T |
2089181 |
tgccataatcatgtagacacttgcagaatatat |
2089149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 267
Target Start/End: Complemental strand, 1559479 - 1559287
Alignment:
| Q |
59 |
aaaataaggagccataaggccaaattgatcatagcaatgttccttgaaatcagtgtcaaggctagaaaggaaacagcataccccaacaagagtaagagtg |
158 |
Q |
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||||||| |||||||||| | | | | |||| |||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |
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| T |
1559479 |
aaaataaagagccataagacaagagtaatcacagcaatgttcagtgaaatcagtgtcaaggctaaaaaggacaaagcataccccaacaagagtaagagtg |
1559380 |
T |
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| Q |
159 |
agattggaaaaatagtaacaggatgttgtagttgcaagagagtttggagcacacaaattaagaagtatgccatgatgatgtagacacttgctgaaaatat |
258 |
Q |
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| T |
1559379 |
agatttggaaaatactaacagaat----------ca------tttggagcagacaaactaagaagtatgccataatgatgtagacacttgctgaaaataa |
1559296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 2073316 - 2073499
Alignment:
| Q |
78 |
ccaaattgatcatagcaatgttccttgaaatcagtgtcaaggctagaaaggaaacagcataccccaacaagagtaagagtgagattggaaaaata---gt |
174 |
Q |
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|||||||||||| |||||| || ||||||||||||||| |||| ||| ||||||||| |||||||| |||| ||||||||||| || |||| | | |
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| T |
2073316 |
ccaaattgatcacagcaatattgagtgaaatcagtgtcaacgctaaaaaagaaacagcacaccccaacgagagcaagagtgagatagggaaaagaccaga |
2073415 |
T |
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| Q |
175 |
aacaggatgttgtagttgcaagagagtttggagcacacaaattaagaagtatgccatgatgatgtagacacttgctgaaaatat |
258 |
Q |
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| T |
2073416 |
attaggaataggttgttgtaagagagtttggagcacccaaactaagaagtatgccataatcatgtagacacttgcagaatatat |
2073499 |
T |
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