View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_low_30 (Length: 251)
Name: NF18707_low_30
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 5194606 - 5194741
Alignment:
| Q |
102 |
tgaaaatgtagcaactagcaagcatatttcatatcccnnnnnnnnn---caaatctatattatatggcaaacaaagtgccaaaatatgatgttcccgtta |
198 |
Q |
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| T |
5194606 |
tgaaaatgtagcaactagcaagcatatttcatatcccaaaaaaaaaaaacaaatctatattatatggcaaacat-gtgccaaaatatgatgttcccgtta |
5194704 |
T |
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| Q |
199 |
tatttaaaaaattaatataaaaagtaccctaccatat |
235 |
Q |
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| T |
5194705 |
tatttagaaaattaatataaaaagtaccctaccatat |
5194741 |
T |
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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 5188941 - 5189029
Alignment:
| Q |
21 |
atagcaccat-aagtatgatatagaataaagactgcaaaactgcgtagttagcatgtgcgaaaatagaagtgagccaaagggtgaaaat |
108 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
5188941 |
atagcaccatcaagtatgatatagagcaaagactgcaaaactgcgtagttagcagatgcttcaatagaagtgagccaaagggtgaaaat |
5189029 |
T |
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