View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_low_4 (Length: 598)
Name: NF18707_low_4
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 15 - 583
Target Start/End: Complemental strand, 34262482 - 34261914
Alignment:
| Q |
15 |
acataaagtagcattggaaagtggaacatggagagctaacagtaacagtactgctagtactggaaagtggacaatttgcccacacactgcagaacccgac |
114 |
Q |
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| T |
34262482 |
acataaagtagcattggaaagtggaacatggagagctaacagtaacagtactgctagtactggaaagtggacaatttgcccacacactgcagaacccgac |
34262383 |
T |
|
| Q |
115 |
cgcagtcatggtcacaacttttcttnnnnnnnnnn---tcaactaaattaaccgtaacatctcccagccaaaatgacagaaaacccctcatttgttataa |
211 |
Q |
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| T |
34262382 |
cgcagtcatagtcacaacttttcttccccccccccccatcaactaaattaaccgtcacatctcccagccaaaatgacagaaaacccctcatttgttataa |
34262283 |
T |
|
| Q |
212 |
aagactcatcatctgaactcaaatgattaatgaatttcgtaaagacaaatcatttnnnnnnnnccctgagcttaatttcgagtaaataaactttatatac |
311 |
Q |
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|||| ||||| |||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
34262282 |
aagattcatc---tgaattcaaatggttaatgagtttcgtaaagacaaatcatttaaaaaaaaccctgagcttaatttcgagtaaataaactttatttac |
34262186 |
T |
|
| Q |
312 |
cattcaactgaatttcatattacacatagagaccagccaagacaagacaaacgcttctccctcactcacccccacaaaccaaaccaaacctgtcacatag |
411 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34262185 |
cattcaactgaatctcatattacacatagagaccagccaagacaagacaaacgcttctccctcactcacccccaccaaccaaaccaaacctgtcacatag |
34262086 |
T |
|
| Q |
412 |
agactcttcctcacgccacaacactaatcatcaaatcaaactcaaagttatgtaattatgttatgttcccttaactcattttggctccattcacaagcca |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34262085 |
agactcttcctcacgccacaacactaatcatcaaatcaaactcaaagttatgtaattatgttatgttcccttaactcattttggctccattcacaagcca |
34261986 |
T |
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| Q |
512 |
tggcgtgtctaacaccccattgcatttattgttacatttactattttgccacttaaacaacaacactcctct |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34261985 |
tggcgtgtctaacaccccattgcatttattgttacatttactattttgccacttaaacaataacactcctct |
34261914 |
T |
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